Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Cdx1P18111 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC13.89□□□□□ -0.19
Cdx1P18111 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC13.89□□□□□ -0.19
Cdx1P18111 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC13.89□□□□□ -0.19
Cdx1P18111 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Cdx1P18111 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Cdx1P18111 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Cdx1P18111 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdx1P18111 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdx1P18111 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdx1P18111 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdx1P18111 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Cdx1P18111 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Cdx1P18111 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Cdx1P18111 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Cdx1P18111 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
Cdx1P18111 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC13.88□□□□□ -0.19
Cdx1P18111 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC13.88□□□□□ -0.19
Cdx1P18111 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Gm4968-201ENSMUST00000071458 858 ntBASIC13.88□□□□□ -0.19
Cdx1P18111 Gm32699-201ENSMUST00000221728 1988 ntBASIC13.88□□□□□ -0.19
Cdx1P18111 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC13.88□□□□□ -0.19
Cdx1P18111 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Cdx1P18111 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC13.88□□□□□ -0.19
Cdx1P18111 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
Cdx1P18111 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Cdx1P18111 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC13.87□□□□□ -0.19
Cdx1P18111 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Cdx1P18111 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
Cdx1P18111 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Cdx1P18111 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
Cdx1P18111 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC13.86□□□□□ -0.19
Cdx1P18111 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
Cdx1P18111 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Cdx1P18111 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC13.86□□□□□ -0.19
Cdx1P18111 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
Cdx1P18111 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC13.86□□□□□ -0.19
Cdx1P18111 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Nespas-201ENSMUST00000143738 1083 ntBASIC13.86□□□□□ -0.19
Cdx1P18111 CT030146.1-201ENSMUST00000220919 217 ntBASIC13.86□□□□□ -0.19
Cdx1P18111 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Gm42911-201ENSMUST00000199360 1630 ntBASIC13.86□□□□□ -0.19
Cdx1P18111 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Cdx1P18111 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdx1P18111 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Cdx1P18111 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdx1P18111 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdx1P18111 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdx1P18111 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
Cdx1P18111 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms