Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC32.12■■■□□ 2.73
Trim28Q62318 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
Trim28Q62318 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
Trim28Q62318 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
Trim28Q62318 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC32.11■■■□□ 2.73
Trim28Q62318 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC32.11■■■□□ 2.73
Trim28Q62318 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
Trim28Q62318 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
Trim28Q62318 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC32.1■■■□□ 2.73
Trim28Q62318 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC32.09■■■□□ 2.73
Trim28Q62318 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC32.09■■■□□ 2.73
Trim28Q62318 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC32.09■■■□□ 2.73
Trim28Q62318 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC32.09■■■□□ 2.73
Trim28Q62318 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
Trim28Q62318 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC32.04■■■□□ 2.72
Trim28Q62318 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
Trim28Q62318 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
Trim28Q62318 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
Trim28Q62318 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC32■■■□□ 2.71
Trim28Q62318 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Trim28Q62318 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Trim28Q62318 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC31.97■■■□□ 2.71
Trim28Q62318 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
Trim28Q62318 Gm6206-201ENSMUST00000133472 2199 ntBASIC31.97■■■□□ 2.71
Trim28Q62318 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC31.96■■■□□ 2.71
Trim28Q62318 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Trim28Q62318 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
Trim28Q62318 Gm11599-201ENSMUST00000118720 878 ntBASIC31.95■■■□□ 2.71
Trim28Q62318 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC31.95■■■□□ 2.71
Trim28Q62318 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
Trim28Q62318 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
Trim28Q62318 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC31.92■■■□□ 2.7
Trim28Q62318 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Trim28Q62318 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC31.91■■■□□ 2.7
Trim28Q62318 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
Trim28Q62318 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Trim28Q62318 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
Trim28Q62318 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC31.9■■■□□ 2.7
Trim28Q62318 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Trim28Q62318 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
Trim28Q62318 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
Trim28Q62318 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
Trim28Q62318 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Trim28Q62318 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC31.85■■■□□ 2.69
Trim28Q62318 Gm9905-201ENSMUST00000065740 1845 ntBASIC31.84■■■□□ 2.69
Trim28Q62318 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
Trim28Q62318 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC31.83■■■□□ 2.69
Trim28Q62318 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC31.82■■■□□ 2.69
Trim28Q62318 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Trim28Q62318 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC31.82■■■□□ 2.68
Trim28Q62318 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Trim28Q62318 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC31.81■■■□□ 2.68
Trim28Q62318 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
Trim28Q62318 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Trim28Q62318 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Trim28Q62318 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC31.8■■■□□ 2.68
Trim28Q62318 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Trim28Q62318 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Trim28Q62318 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Trim28Q62318 AC131739.1-201ENSMUST00000221692 1245 ntBASIC31.78■■■□□ 2.68
Trim28Q62318 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC31.78■■■□□ 2.68
Trim28Q62318 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC31.77■■■□□ 2.68
Trim28Q62318 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC31.77■■■□□ 2.68
Trim28Q62318 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Trim28Q62318 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Trim28Q62318 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
Trim28Q62318 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
Trim28Q62318 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
Trim28Q62318 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
Trim28Q62318 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC31.73■■■□□ 2.67
Trim28Q62318 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC31.72■■■□□ 2.67
Trim28Q62318 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Trim28Q62318 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
Trim28Q62318 Particl-201ENSMUST00000205370 1560 ntBASIC31.7■■■□□ 2.67
Trim28Q62318 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
Trim28Q62318 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Trim28Q62318 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Trim28Q62318 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Trim28Q62318 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Trim28Q62318 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Trim28Q62318 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC31.64■■■□□ 2.66
Trim28Q62318 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
Trim28Q62318 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Trim28Q62318 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
Trim28Q62318 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Trim28Q62318 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC31.61■■■□□ 2.65
Trim28Q62318 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Trim28Q62318 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Trim28Q62318 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Trim28Q62318 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC31.6■■■□□ 2.65
Trim28Q62318 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC31.6■■■□□ 2.65
Trim28Q62318 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
Trim28Q62318 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
Trim28Q62318 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Trim28Q62318 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC31.57■■■□□ 2.64
Trim28Q62318 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC31.57■■■□□ 2.64
Trim28Q62318 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Trim28Q62318 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC31.55■■■□□ 2.64
Trim28Q62318 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Trim28Q62318 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC31.55■■■□□ 2.64
Retrieved 100 of 76,532 protein–RNA pairs in 10.9 ms