Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Ubr3Q5U430 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ubr3Q5U430 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
Ubr3Q5U430 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC30.53■■■□□ 2.48
Ubr3Q5U430 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
Ubr3Q5U430 Gm30023-201ENSMUST00000197970 889 ntBASIC30.53■■■□□ 2.48
Ubr3Q5U430 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
Ubr3Q5U430 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Ubr3Q5U430 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
Ubr3Q5U430 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
Ubr3Q5U430 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
Ubr3Q5U430 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
Ubr3Q5U430 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
Ubr3Q5U430 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
Ubr3Q5U430 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
Ubr3Q5U430 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC30.47■■■□□ 2.47
Ubr3Q5U430 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.46
Ubr3Q5U430 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Ubr3Q5U430 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
Ubr3Q5U430 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Ubr3Q5U430 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ubr3Q5U430 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ubr3Q5U430 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC30.4■■■□□ 2.46
Ubr3Q5U430 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
Ubr3Q5U430 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Ubr3Q5U430 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Ubr3Q5U430 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
Ubr3Q5U430 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC30.38■■■□□ 2.45
Ubr3Q5U430 Gm12366-201ENSMUST00000121722 873 ntBASIC30.38■■■□□ 2.45
Ubr3Q5U430 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC30.38■■■□□ 2.45
Ubr3Q5U430 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC30.38■■■□□ 2.45
Ubr3Q5U430 Gm5786-201ENSMUST00000085368 882 ntBASIC30.38■■■□□ 2.45
Ubr3Q5U430 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
Ubr3Q5U430 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
Ubr3Q5U430 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC30.36■■■□□ 2.45
Ubr3Q5U430 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Ubr3Q5U430 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
Ubr3Q5U430 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Ubr3Q5U430 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Ubr3Q5U430 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Ubr3Q5U430 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC30.33■■■□□ 2.45
Ubr3Q5U430 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC30.32■■■□□ 2.44
Ubr3Q5U430 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Ubr3Q5U430 Scarna2-201ENSMUST00000157560 414 ntBASIC30.3■■■□□ 2.44
Ubr3Q5U430 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Ubr3Q5U430 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Ubr3Q5U430 Gm4799-201ENSMUST00000095396 657 ntBASIC30.29■■■□□ 2.44
Ubr3Q5U430 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Ubr3Q5U430 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Ubr3Q5U430 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Ubr3Q5U430 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC30.26■■■□□ 2.43
Ubr3Q5U430 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Ubr3Q5U430 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Ubr3Q5U430 Gm11687-201ENSMUST00000118911 886 ntBASIC30.25■■■□□ 2.43
Ubr3Q5U430 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Ubr3Q5U430 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
Ubr3Q5U430 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC30.25■■■□□ 2.43
Ubr3Q5U430 Gm9806-201ENSMUST00000051080 552 ntBASIC30.25■■■□□ 2.43
Ubr3Q5U430 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
Ubr3Q5U430 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC30.23■■■□□ 2.43
Ubr3Q5U430 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Ubr3Q5U430 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Ubr3Q5U430 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC30.22■■■□□ 2.43
Ubr3Q5U430 Gm45364-201ENSMUST00000210883 159 ntBASIC30.22■■■□□ 2.43
Ubr3Q5U430 Pkd1-207ENSMUST00000228550 1050 ntBASIC30.22■■■□□ 2.43
Ubr3Q5U430 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
Ubr3Q5U430 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
Ubr3Q5U430 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC30.18■■■□□ 2.42
Ubr3Q5U430 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
Ubr3Q5U430 Pcf11-205ENSMUST00000208255 1720 ntBASIC30.18■■■□□ 2.42
Ubr3Q5U430 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC30.17■■■□□ 2.42
Ubr3Q5U430 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC30.16■■■□□ 2.42
Ubr3Q5U430 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
Ubr3Q5U430 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC30.16■■■□□ 2.42
Ubr3Q5U430 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC30.16■■■□□ 2.42
Ubr3Q5U430 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
Ubr3Q5U430 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
Ubr3Q5U430 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC30.14■■■□□ 2.42
Ubr3Q5U430 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Ubr3Q5U430 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
Ubr3Q5U430 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Ubr3Q5U430 Gm27502-201ENSMUST00000183495 199 ntBASIC30.12■■■□□ 2.41
Ubr3Q5U430 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
Ubr3Q5U430 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC30.12■■■□□ 2.41
Ubr3Q5U430 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
Ubr3Q5U430 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC30.12■■■□□ 2.41
Ubr3Q5U430 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
Ubr3Q5U430 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC30.12■■■□□ 2.41
Ubr3Q5U430 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC30.1■■■□□ 2.41
Ubr3Q5U430 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
Ubr3Q5U430 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
Ubr3Q5U430 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Ubr3Q5U430 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
Ubr3Q5U430 Gm16437-201ENSMUST00000025669 507 ntBASIC30.09■■■□□ 2.41
Ubr3Q5U430 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC30.08■■■□□ 2.41
Ubr3Q5U430 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Ubr3Q5U430 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
Ubr3Q5U430 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Ubr3Q5U430 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC30.06■■■□□ 2.4
Ubr3Q5U430 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC30.06■■■□□ 2.4
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms