Protein–RNA interactions for Protein: P55066

Ncan, Neurocan core protein, mousemouse

Predictions only

Length 1,268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NcanP55066 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
NcanP55066 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
NcanP55066 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
NcanP55066 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NcanP55066 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
NcanP55066 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NcanP55066 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
NcanP55066 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC26.36■■□□□ 1.81
NcanP55066 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC26.36■■□□□ 1.81
NcanP55066 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
NcanP55066 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
NcanP55066 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC26.35■■□□□ 1.81
NcanP55066 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
NcanP55066 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NcanP55066 Gm4799-201ENSMUST00000095396 657 ntBASIC26.34■■□□□ 1.81
NcanP55066 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NcanP55066 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
NcanP55066 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NcanP55066 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NcanP55066 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
NcanP55066 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NcanP55066 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
NcanP55066 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
NcanP55066 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
NcanP55066 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
NcanP55066 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC26.29■■□□□ 1.8
NcanP55066 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
NcanP55066 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC26.28■■□□□ 1.8
NcanP55066 Gm11687-201ENSMUST00000118911 886 ntBASIC26.28■■□□□ 1.8
NcanP55066 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NcanP55066 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NcanP55066 Gm9806-201ENSMUST00000051080 552 ntBASIC26.27■■□□□ 1.8
NcanP55066 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NcanP55066 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NcanP55066 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
NcanP55066 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
NcanP55066 Particl-201ENSMUST00000205370 1560 ntBASIC26.25■■□□□ 1.79
NcanP55066 Gm16437-201ENSMUST00000025669 507 ntBASIC26.25■■□□□ 1.79
NcanP55066 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NcanP55066 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
NcanP55066 Gm2415-204ENSMUST00000190235 2004 ntBASIC26.24■■□□□ 1.79
NcanP55066 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC26.23■■□□□ 1.79
NcanP55066 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC26.23■■□□□ 1.79
NcanP55066 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
NcanP55066 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NcanP55066 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
NcanP55066 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC26.21■■□□□ 1.79
NcanP55066 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NcanP55066 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC26.21■■□□□ 1.79
NcanP55066 Gm27502-201ENSMUST00000183495 199 ntBASIC26.2■■□□□ 1.78
NcanP55066 Gm30023-201ENSMUST00000197970 889 ntBASIC26.2■■□□□ 1.78
NcanP55066 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
NcanP55066 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
NcanP55066 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC26.19■■□□□ 1.78
NcanP55066 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC26.19■■□□□ 1.78
NcanP55066 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
NcanP55066 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
NcanP55066 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
NcanP55066 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NcanP55066 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NcanP55066 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC26.14■■□□□ 1.78
NcanP55066 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
NcanP55066 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
NcanP55066 Gm7332-201ENSMUST00000118351 454 ntBASIC26.13■■□□□ 1.77
NcanP55066 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
NcanP55066 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
NcanP55066 Gm5297-201ENSMUST00000198555 1171 ntBASIC26.12■■□□□ 1.77
NcanP55066 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
NcanP55066 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
NcanP55066 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
NcanP55066 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
NcanP55066 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
NcanP55066 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NcanP55066 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
NcanP55066 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC26.08■■□□□ 1.77
NcanP55066 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
NcanP55066 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
NcanP55066 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
NcanP55066 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
NcanP55066 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NcanP55066 Pkd1-207ENSMUST00000228550 1050 ntBASIC26.05■■□□□ 1.76
NcanP55066 Gm5812-201ENSMUST00000061073 957 ntBASIC26.05■■□□□ 1.76
NcanP55066 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
NcanP55066 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
NcanP55066 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC26.05■■□□□ 1.76
NcanP55066 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
NcanP55066 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NcanP55066 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC26.02■■□□□ 1.76
NcanP55066 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
NcanP55066 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC26■■□□□ 1.75
NcanP55066 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
NcanP55066 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
NcanP55066 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
NcanP55066 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC25.99■■□□□ 1.75
NcanP55066 Gm6658-202ENSMUST00000209493 1885 ntBASIC25.99■■□□□ 1.75
NcanP55066 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
NcanP55066 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC25.94■■□□□ 1.74
NcanP55066 Gm45364-201ENSMUST00000210883 159 ntBASIC25.94■■□□□ 1.74
NcanP55066 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
NcanP55066 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms