Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb3O54879 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb3O54879 Gm25262-201ENSMUST00000174934 133 ntBASIC19.73■□□□□ 0.75
Hmgb3O54879 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb3O54879 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Hmgb3O54879 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Hmgb3O54879 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Hmgb3O54879 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC19.71■□□□□ 0.75
Hmgb3O54879 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb3O54879 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb3O54879 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Hmgb3O54879 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb3O54879 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb3O54879 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Hmgb3O54879 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Hmgb3O54879 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Hmgb3O54879 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Hmgb3O54879 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb3O54879 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb3O54879 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb3O54879 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb3O54879 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Hmgb3O54879 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb3O54879 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb3O54879 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Hmgb3O54879 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb3O54879 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Hmgb3O54879 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb3O54879 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb3O54879 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC19.65■□□□□ 0.74
Hmgb3O54879 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Hmgb3O54879 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Hmgb3O54879 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb3O54879 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb3O54879 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Hmgb3O54879 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Hmgb3O54879 Gm27322-201ENSMUST00000184007 104 ntBASIC19.64■□□□□ 0.73
Hmgb3O54879 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hmgb3O54879 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hmgb3O54879 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hmgb3O54879 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hmgb3O54879 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hmgb3O54879 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.62■□□□□ 0.73
Hmgb3O54879 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hmgb3O54879 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hmgb3O54879 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Hmgb3O54879 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb3O54879 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb3O54879 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb3O54879 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hmgb3O54879 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Hmgb3O54879 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Hmgb3O54879 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC19.59■□□□□ 0.73
Hmgb3O54879 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Hmgb3O54879 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Hmgb3O54879 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Hmgb3O54879 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Hmgb3O54879 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Hmgb3O54879 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hmgb3O54879 Gm17082-201ENSMUST00000166043 1091 ntBASIC19.57■□□□□ 0.72
Hmgb3O54879 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC19.57■□□□□ 0.72
Hmgb3O54879 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hmgb3O54879 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hmgb3O54879 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Hmgb3O54879 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Hmgb3O54879 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Hmgb3O54879 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Hmgb3O54879 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hmgb3O54879 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Hmgb3O54879 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Hmgb3O54879 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Hmgb3O54879 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
Hmgb3O54879 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Hmgb3O54879 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Hmgb3O54879 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Hmgb3O54879 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Hmgb3O54879 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Hmgb3O54879 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Hmgb3O54879 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
Hmgb3O54879 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Hmgb3O54879 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.51■□□□□ 0.71
Hmgb3O54879 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb3O54879 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Hmgb3O54879 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb3O54879 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hmgb3O54879 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Hmgb3O54879 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb3O54879 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Hmgb3O54879 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb3O54879 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Hmgb3O54879 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Hmgb3O54879 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb3O54879 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hmgb3O54879 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb3O54879 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Hmgb3O54879 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hmgb3O54879 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
Hmgb3O54879 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb3O54879 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hmgb3O54879 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms