Protein–RNA interactions for Protein: A0A0G2JFX3

Trav13d-4, T cell receptor alpha variable 13D-4 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-4A0A0G2JFX3 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trav13d-4A0A0G2JFX3 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC16.33■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trav13d-4A0A0G2JFX3 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC16.32■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC16.3■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC16.3■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Pcf11-205ENSMUST00000208255 1720 ntBASIC16.28■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav13d-4A0A0G2JFX3 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trav13d-4A0A0G2JFX3 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC16.27■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC16.22■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav13d-4A0A0G2JFX3 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC16.22■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trav13d-4A0A0G2JFX3 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC16.2■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav13d-4A0A0G2JFX3 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav13d-4A0A0G2JFX3 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC16.15■□□□□ 0.18
Trav13d-4A0A0G2JFX3 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
Trav13d-4A0A0G2JFX3 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC16.13■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-4A0A0G2JFX3 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav13d-4A0A0G2JFX3 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav13d-4A0A0G2JFX3 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms