Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Gm26115-201ENSMUST00000175605 87 ntBASIC16.29■□□□□ 0.2
Trav11A0A0B4J1J9 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav11A0A0B4J1J9 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav11A0A0B4J1J9 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Gm8109-201ENSMUST00000194076 746 ntBASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav11A0A0B4J1J9 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav11A0A0B4J1J9 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav11A0A0B4J1J9 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC16.25■□□□□ 0.19
Trav11A0A0B4J1J9 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav11A0A0B4J1J9 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav11A0A0B4J1J9 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav11A0A0B4J1J9 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Trav11A0A0B4J1J9 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav11A0A0B4J1J9 Pcf11-205ENSMUST00000208255 1720 ntBASIC16.24■□□□□ 0.19
Trav11A0A0B4J1J9 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav11A0A0B4J1J9 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav11A0A0B4J1J9 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav11A0A0B4J1J9 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav11A0A0B4J1J9 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav11A0A0B4J1J9 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Trav11A0A0B4J1J9 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav11A0A0B4J1J9 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav11A0A0B4J1J9 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav11A0A0B4J1J9 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trav11A0A0B4J1J9 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav11A0A0B4J1J9 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav11A0A0B4J1J9 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav11A0A0B4J1J9 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav11A0A0B4J1J9 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Trav11A0A0B4J1J9 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav11A0A0B4J1J9 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trav11A0A0B4J1J9 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav11A0A0B4J1J9 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC16.16■□□□□ 0.18
Trav11A0A0B4J1J9 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav11A0A0B4J1J9 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav11A0A0B4J1J9 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav11A0A0B4J1J9 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav11A0A0B4J1J9 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav11A0A0B4J1J9 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav11A0A0B4J1J9 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC16.15■□□□□ 0.18
Trav11A0A0B4J1J9 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trav11A0A0B4J1J9 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC16.14■□□□□ 0.17
Trav11A0A0B4J1J9 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav11A0A0B4J1J9 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav11A0A0B4J1J9 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav11A0A0B4J1J9 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav11A0A0B4J1J9 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav11A0A0B4J1J9 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav11A0A0B4J1J9 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav11A0A0B4J1J9 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC16.11■□□□□ 0.17
Trav11A0A0B4J1J9 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav11A0A0B4J1J9 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav11A0A0B4J1J9 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav11A0A0B4J1J9 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trav11A0A0B4J1J9 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Trav11A0A0B4J1J9 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav11A0A0B4J1J9 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav11A0A0B4J1J9 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC16.09■□□□□ 0.17
Trav11A0A0B4J1J9 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav11A0A0B4J1J9 AC122428.3-201ENSMUST00000215551 2290 ntBASIC16.09■□□□□ 0.17
Trav11A0A0B4J1J9 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
Trav11A0A0B4J1J9 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav11A0A0B4J1J9 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trav11A0A0B4J1J9 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav11A0A0B4J1J9 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Trav11A0A0B4J1J9 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav11A0A0B4J1J9 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav11A0A0B4J1J9 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav11A0A0B4J1J9 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trav11A0A0B4J1J9 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
Trav11A0A0B4J1J9 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
Trav11A0A0B4J1J9 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav11A0A0B4J1J9 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav11A0A0B4J1J9 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav11A0A0B4J1J9 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 10.3 ms