Protein–RNA interactions for Protein: A0A075B6B9

Trav6d-5, T cell receptor alpha variable 6D-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-5A0A075B6B9 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Trav6d-5A0A075B6B9 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6d-5A0A075B6B9 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6d-5A0A075B6B9 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6d-5A0A075B6B9 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6d-5A0A075B6B9 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trav6d-5A0A075B6B9 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Trav6d-5A0A075B6B9 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trav6d-5A0A075B6B9 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
Trav6d-5A0A075B6B9 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC19.32■□□□□ 0.68
Trav6d-5A0A075B6B9 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Trav6d-5A0A075B6B9 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav6d-5A0A075B6B9 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trav6d-5A0A075B6B9 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trav6d-5A0A075B6B9 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav6d-5A0A075B6B9 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav6d-5A0A075B6B9 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav6d-5A0A075B6B9 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trav6d-5A0A075B6B9 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav6d-5A0A075B6B9 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trav6d-5A0A075B6B9 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6d-5A0A075B6B9 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6d-5A0A075B6B9 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trav6d-5A0A075B6B9 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6d-5A0A075B6B9 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6d-5A0A075B6B9 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC19.28■□□□□ 0.68
Trav6d-5A0A075B6B9 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6d-5A0A075B6B9 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trav6d-5A0A075B6B9 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Trav6d-5A0A075B6B9 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Trav6d-5A0A075B6B9 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Trav6d-5A0A075B6B9 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trav6d-5A0A075B6B9 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6d-5A0A075B6B9 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Trav6d-5A0A075B6B9 Il17rd-202ENSMUST00000223942 2186 ntBASIC19.26■□□□□ 0.67
Trav6d-5A0A075B6B9 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6d-5A0A075B6B9 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Trav6d-5A0A075B6B9 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6d-5A0A075B6B9 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6d-5A0A075B6B9 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trav6d-5A0A075B6B9 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC19.24■□□□□ 0.67
Trav6d-5A0A075B6B9 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Trav6d-5A0A075B6B9 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav6d-5A0A075B6B9 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trav6d-5A0A075B6B9 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trav6d-5A0A075B6B9 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
Trav6d-5A0A075B6B9 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav6d-5A0A075B6B9 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav6d-5A0A075B6B9 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trav6d-5A0A075B6B9 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trav6d-5A0A075B6B9 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trav6d-5A0A075B6B9 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Trav6d-5A0A075B6B9 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6d-5A0A075B6B9 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6d-5A0A075B6B9 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6d-5A0A075B6B9 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6d-5A0A075B6B9 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC19.19■□□□□ 0.66
Trav6d-5A0A075B6B9 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6d-5A0A075B6B9 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6d-5A0A075B6B9 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6d-5A0A075B6B9 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Trav6d-5A0A075B6B9 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6d-5A0A075B6B9 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6d-5A0A075B6B9 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trav6d-5A0A075B6B9 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav6d-5A0A075B6B9 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trav6d-5A0A075B6B9 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trav6d-5A0A075B6B9 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Trav6d-5A0A075B6B9 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Trav6d-5A0A075B6B9 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Trav6d-5A0A075B6B9 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav6d-5A0A075B6B9 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
Trav6d-5A0A075B6B9 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav6d-5A0A075B6B9 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Trav6d-5A0A075B6B9 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trav6d-5A0A075B6B9 Gm26115-201ENSMUST00000175605 87 ntBASIC19.12■□□□□ 0.65
Trav6d-5A0A075B6B9 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC19.12■□□□□ 0.65
Trav6d-5A0A075B6B9 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Trav6d-5A0A075B6B9 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav6d-5A0A075B6B9 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav6d-5A0A075B6B9 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC19.11■□□□□ 0.65
Trav6d-5A0A075B6B9 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Trav6d-5A0A075B6B9 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Trav6d-5A0A075B6B9 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
Trav6d-5A0A075B6B9 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6d-5A0A075B6B9 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Trav6d-5A0A075B6B9 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6d-5A0A075B6B9 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6d-5A0A075B6B9 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6d-5A0A075B6B9 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6d-5A0A075B6B9 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6d-5A0A075B6B9 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6d-5A0A075B6B9 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6d-5A0A075B6B9 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Trav6d-5A0A075B6B9 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
Trav6d-5A0A075B6B9 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav6d-5A0A075B6B9 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Trav6d-5A0A075B6B9 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Trav6d-5A0A075B6B9 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav6d-5A0A075B6B9 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms