Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC240504.1-201ENST00000395709 845 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 C1D-203ENST00000409302 772 ntAPPRIS P1 TSL 5 BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 LINC01049-201ENST00000426840 742 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 FECHP1-201ENST00000431896 1214 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 NFYAP1-201ENST00000431953 972 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 OR13C1P-201ENST00000457612 963 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC084878.1-201ENST00000480555 648 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 RN7SL152P-201ENST00000484176 298 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC027801.3-201ENST00000515049 698 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 HNRNPCP8-201ENST00000528764 888 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 SAA3P-201ENST00000533267 365 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC087257.2-201ENST00000538759 928 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC233290.1-201ENST00000553021 1186 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC022898.1-202ENST00000560864 806 ntTSL 2 BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AP001554.1-201ENST00000604533 376 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC139792.1-201ENST00000607051 647 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 RN7SL778P-201ENST00000607160 297 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AL157762.1-201ENST00000619612 415 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 MIR8089-201ENST00000620165 82 ntBASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 AC063952.4-201ENST00000634744 825 ntTSL 5 BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC8.68□□□□□ -1.02
CHMP4CQ96CF2 CEBPZ-201ENST00000234170 3463 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 RN7SKP174-201ENST00000363803 330 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 RN7SKP36-201ENST00000363997 312 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 SNORA3.1-201ENST00000408166 111 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 MTCO1P8-201ENST00000416914 1523 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AC020983.1-201ENST00000417063 543 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AL035691.1-201ENST00000434562 595 ntTSL 3 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AC005517.1-201ENST00000452091 489 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AL157400.2-201ENST00000454174 563 ntTSL 2 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 SNORA35.1-201ENST00000458908 128 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AC007688.1-201ENST00000475592 759 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AC066616.1-201ENST00000486795 413 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 ZBED3-AS1-203ENST00000504506 702 ntTSL 3 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AC146944.2-201ENST00000504546 1073 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AC139495.1-201ENST00000510264 1073 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 RNA5SP96-201ENST00000516041 107 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AZIN1-AS1-211ENST00000520455 480 ntTSL 3 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AC026616.1-201ENST00000523157 525 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 OR5M4P-201ENST00000529436 925 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AC007611.1-202ENST00000564212 854 ntTSL 3 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 CBLN2-203ENST00000581073 537 ntTSL 4 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AL050343.1-203ENST00000586761 1290 ntTSL 3 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 MIR663AHG-213ENST00000596767 837 ntTSL 5 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AC009955.2-201ENST00000597288 542 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 IFNA5-201ENST00000610521 987 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AC007347.2-201ENST00000623044 180 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 ENSA-215ENST00000638926 360 ntTSL 5 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 AC016251.2-201ENST00000623393 3089 ntBASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC8.67□□□□□ -1.02
CHMP4CQ96CF2 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 ZFP62-207ENST00000512132 4010 ntTSL 2 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 AC091544.5-201ENST00000620192 3815 ntBASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 KCNMB3P1-202ENST00000493696 3389 ntBASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 DCP1B-205ENST00000540622 1547 ntTSL 5 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 HDAC1P1-201ENST00000455482 1445 ntBASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 LINC02324-201ENST00000531609 1442 ntTSL 2 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 EEF1A1P22-201ENST00000559385 1380 ntBASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 MROH3P-201ENST00000435735 2676 ntBASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 OR1C1-201ENST00000408896 1307 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 OR5AU1-201ENST00000304418 1199 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 OR4A16-201ENST00000314721 1081 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
CHMP4CQ96CF2 OR51L1-201ENST00000321543 948 ntAPPRIS P1 BASIC8.66□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms