Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 DNAJA1P5-201ENST00000440278 943 ntBASIC11.5□□□□□ -0.57
CUX1P39880 AC018645.1-201ENST00000505003 109 ntBASIC11.5□□□□□ -0.57
CUX1P39880 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC11.5□□□□□ -0.57
CUX1P39880 PPP4R1-AS1-201ENST00000582435 379 ntTSL 2 BASIC11.5□□□□□ -0.57
CUX1P39880 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC11.5□□□□□ -0.57
CUX1P39880 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC11.5□□□□□ -0.57
CUX1P39880 Six3os1_1.1-201ENST00000620900 87 ntBASIC11.5□□□□□ -0.57
CUX1P39880 DNAJC18-201ENST00000302060 5103 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CUX1P39880 PBRM1-208ENST00000410007 4905 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CUX1P39880 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CUX1P39880 TRIM51HP-202ENST00000530412 1823 ntBASIC11.5□□□□□ -0.57
CUX1P39880 SH3BP5-AS1-202ENST00000420195 5570 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CUX1P39880 IL16-201ENST00000302987 3999 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
CUX1P39880 KIF6-208ENST00000538893 2386 ntTSL 5 BASIC11.5□□□□□ -0.57
CUX1P39880 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
CUX1P39880 TXLNG-201ENST00000380122 4401 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
CUX1P39880 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
CUX1P39880 ZNF441-201ENST00000357901 4356 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
CUX1P39880 OXCT1-204ENST00000509987 1441 ntTSL 2 BASIC11.5□□□□□ -0.57
CUX1P39880 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CUX1P39880 ZKSCAN5-201ENST00000326775 4178 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CUX1P39880 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
CUX1P39880 RPL11P4-201ENST00000332269 436 ntBASIC11.5□□□□□ -0.57
CUX1P39880 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC11.5□□□□□ -0.57
CUX1P39880 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC11.5□□□□□ -0.57
CUX1P39880 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC11.5□□□□□ -0.57
CUX1P39880 RNA5SP287-201ENST00000516358 103 ntBASIC11.5□□□□□ -0.57
CUX1P39880 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC11.5□□□□□ -0.57
CUX1P39880 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC11.5□□□□□ -0.57
CUX1P39880 CCND2-AS2-201ENST00000537370 495 ntTSL 4 BASIC11.5□□□□□ -0.57
CUX1P39880 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC11.5□□□□□ -0.57
CUX1P39880 AL162511.1-201ENST00000556542 879 ntTSL 4 BASIC11.5□□□□□ -0.57
CUX1P39880 RN7SL199P-201ENST00000578752 281 ntBASIC11.5□□□□□ -0.57
CUX1P39880 RN7SL656P-201ENST00000579044 281 ntBASIC11.5□□□□□ -0.57
CUX1P39880 RN7SL270P-201ENST00000579643 281 ntBASIC11.5□□□□□ -0.57
CUX1P39880 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC11.5□□□□□ -0.57
CUX1P39880 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC11.5□□□□□ -0.57
CUX1P39880 CADM1-203ENST00000452722 8588 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
CUX1P39880 DUXAP8-204ENST00000447898 4136 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CUX1P39880 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC11.49□□□□□ -0.57
CUX1P39880 RHOBTB1-202ENST00000357917 4339 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
CUX1P39880 AC018992.1-201ENST00000523778 2149 ntBASIC11.49□□□□□ -0.57
CUX1P39880 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC11.49□□□□□ -0.57
CUX1P39880 ZMYM6-203ENST00000373333 1473 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CUX1P39880 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC11.49□□□□□ -0.57
CUX1P39880 ADAM2-201ENST00000265708 2672 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
CUX1P39880 AC079061.1-201ENST00000499579 3075 ntTSL 2 BASIC11.49□□□□□ -0.57
CUX1P39880 BBS9-204ENST00000396127 3914 ntTSL 5 BASIC11.49□□□□□ -0.57
CUX1P39880 RNA5SP433-201ENST00000364491 114 ntBASIC11.49□□□□□ -0.57
CUX1P39880 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CUX1P39880 AC068481.1-201ENST00000415520 530 ntTSL 4 BASIC11.49□□□□□ -0.57
CUX1P39880 AC002127.1-201ENST00000421305 225 ntBASIC11.49□□□□□ -0.57
CUX1P39880 GSTA6P-201ENST00000424144 582 ntBASIC11.49□□□□□ -0.57
CUX1P39880 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC11.49□□□□□ -0.57
CUX1P39880 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC11.49□□□□□ -0.57
CUX1P39880 PFN2-217ENST00000498307 556 ntTSL 4 BASIC11.49□□□□□ -0.57
CUX1P39880 OR52H2P-201ENST00000514607 902 ntBASIC11.49□□□□□ -0.57
CUX1P39880 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CUX1P39880 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC11.49□□□□□ -0.57
CUX1P39880 BLID-201ENST00000560104 862 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
CUX1P39880 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC11.49□□□□□ -0.57
CUX1P39880 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC11.49□□□□□ -0.57
CUX1P39880 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
CUX1P39880 IGKV2OR2-1-201ENST00000605129 304 ntBASIC11.49□□□□□ -0.57
CUX1P39880 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC11.49□□□□□ -0.57
CUX1P39880 AC073862.4-201ENST00000622982 854 ntBASIC11.49□□□□□ -0.57
CUX1P39880 OR2A1-202ENST00000641044 4632 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
CUX1P39880 BACH2-201ENST00000257749 9113 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CUX1P39880 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC11.49□□□□□ -0.57
CUX1P39880 CDY7P-201ENST00000429883 1604 ntBASIC11.49□□□□□ -0.57
CUX1P39880 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC11.49□□□□□ -0.57
CUX1P39880 SORBS2-209ENST00000418609 5529 ntTSL 2 BASIC11.49□□□□□ -0.57
CUX1P39880 ZNF592-201ENST00000299927 7863 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
CUX1P39880 IQCA1-206ENST00000431676 3069 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
CUX1P39880 SCIN-209ENST00000519209 2660 ntTSL 2 BASIC11.48□□□□□ -0.57
CUX1P39880 PDZK1-202ENST00000417171 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CUX1P39880 ADA2-204ENST00000399839 3986 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
CUX1P39880 TMPRSS11D-201ENST00000283916 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CUX1P39880 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CUX1P39880 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
CUX1P39880 C10orf25-201ENST00000625168 3078 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CUX1P39880 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
CUX1P39880 IRAK4-214ENST00000613694 4280 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CUX1P39880 EP400NL-208ENST00000475841 7090 ntTSL 2 BASIC11.48□□□□□ -0.57
CUX1P39880 SNORA77.2-201ENST00000408571 112 ntBASIC11.48□□□□□ -0.57
CUX1P39880 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC11.48□□□□□ -0.57
CUX1P39880 GAPDHP16-201ENST00000448152 962 ntBASIC11.48□□□□□ -0.57
CUX1P39880 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC11.48□□□□□ -0.57
CUX1P39880 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC11.48□□□□□ -0.57
CUX1P39880 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC11.48□□□□□ -0.57
CUX1P39880 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC11.48□□□□□ -0.57
CUX1P39880 AC133552.4-201ENST00000576103 676 ntBASIC11.48□□□□□ -0.57
CUX1P39880 AC139795.3-201ENST00000606358 541 ntBASIC11.48□□□□□ -0.57
CUX1P39880 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
CUX1P39880 AC022400.9-201ENST00000623633 273 ntBASIC11.48□□□□□ -0.57
CUX1P39880 MARF1-201ENST00000396368 7743 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
CUX1P39880 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC11.48□□□□□ -0.57
CUX1P39880 SYTL4-204ENST00000372989 3885 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
CUX1P39880 MAP2-203ENST00000361559 2038 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
CUX1P39880 SPARC-201ENST00000231061 3701 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms