Protein–RNA interactions for Protein: P39956

RPH1, DNA damage-responsive transcriptional repressor RPH1, yeastyeast

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPH1P39956 YDL007C-AYDL007C-A 258 nt1.06□□□□□ -2.24
RPH1P39956 HUG1YML058W-A 207 nt1.06□□□□□ -2.24
RPH1P39956 SEC3YER008C 4011 nt1.06□□□□□ -2.24
RPH1P39956 CLU1YMR012W 3834 nt1.06□□□□□ -2.24
RPH1P39956 YLR282CYLR282C 342 nt1.05□□□□□ -2.24
RPH1P39956 COX5BYIL111W 456 nt1.04□□□□□ -2.24
RPH1P39956 PRP42YDR235W 1635 nt1.04□□□□□ -2.24
RPH1P39956 ASE1YOR058C 2658 nt1.03□□□□□ -2.24
RPH1P39956 RPL26BYGR034W 384 nt1.03□□□□□ -2.24
RPH1P39956 PRP5YBR237W 2550 nt1.03□□□□□ -2.24
RPH1P39956 BFR2YDR299W 1605 nt1.02□□□□□ -2.25
RPH1P39956 YKL100W-AYKL100W-A 90 nt1.02□□□□□ -2.25
RPH1P39956 YBL053WYBL053W 375 nt1.02□□□□□ -2.25
RPH1P39956 snR190snR190 190 nt1.01□□□□□ -2.25
RPH1P39956 UTP8YGR128C 2142 nt1.01□□□□□ -2.25
RPH1P39956 BUD3YCL014W 4911 nt1□□□□□ -2.25
RPH1P39956 YML002WYML002W 2214 nt1□□□□□ -2.25
RPH1P39956 Q0092Q0092 141 nt0.99□□□□□ -2.25
RPH1P39956 EMT1tM(CAU)D 73 nt0.99□□□□□ -2.25
RPH1P39956 EMT5tM(CAU)J1 73 nt0.99□□□□□ -2.25
RPH1P39956 EMT3tM(CAU)J2 73 nt0.99□□□□□ -2.25
RPH1P39956 EMT4tM(CAU)M 73 nt0.99□□□□□ -2.25
RPH1P39956 EMT2tM(CAU)O2 73 nt0.99□□□□□ -2.25
RPH1P39956 FYV10YIL097W 1551 nt0.98□□□□□ -2.25
RPH1P39956 YHL015W-AYHL015W-A 84 nt0.97□□□□□ -2.25
RPH1P39956 YLR041WYLR041W 321 nt0.96□□□□□ -2.26
RPH1P39956 ATP8Q0080 147 nt0.95□□□□□ -2.26
RPH1P39956 YGL182CYGL182C 324 nt0.95□□□□□ -2.26
RPH1P39956 YJR029WYJR029W 5268 nt0.94□□□□□ -2.26
RPH1P39956 YPR137C-BYPR137C-B 5268 nt0.94□□□□□ -2.26
RPH1P39956 YBL039C-AYBL039C-A 84 nt0.94□□□□□ -2.26
RPH1P39956 YOR102WYOR102W 351 nt0.94□□□□□ -2.26
RPH1P39956 YOR170WYOR170W 306 nt0.94□□□□□ -2.26
RPH1P39956 KAP120YPL125W 3099 nt0.94□□□□□ -2.26
RPH1P39956 TAH1YCR060W 336 nt0.93□□□□□ -2.26
RPH1P39956 SEC8YPR055W 3198 nt0.92□□□□□ -2.26
RPH1P39956 snR48snR48 113 nt0.92□□□□□ -2.26
RPH1P39956 YGR164WYGR164W 336 nt0.91□□□□□ -2.26
RPH1P39956 YNL170WYNL170W 396 nt0.91□□□□□ -2.26
RPH1P39956 YPR160W-AYPR160W-A 81 nt0.9□□□□□ -2.27
RPH1P39956 PRP16YKR086W 3216 nt0.9□□□□□ -2.27
RPH1P39956 tL(UAA)QtL(UAA)Q 85 nt0.89□□□□□ -2.27
RPH1P39956 tN(GUU)QtN(GUU)Q 71 nt0.89□□□□□ -2.27
RPH1P39956 CHS6YJL099W 2241 nt0.88□□□□□ -2.27
RPH1P39956 SNU13YEL026W 381 nt0.88□□□□□ -2.27
RPH1P39956 YLR232WYLR232W 348 nt0.88□□□□□ -2.27
RPH1P39956 YLR399W-AYLR399W-A 105 nt0.88□□□□□ -2.27
RPH1P39956 YOR314W-AYOR314W-A 111 nt0.88□□□□□ -2.27
RPH1P39956 PAU24YBR301W 363 nt0.88□□□□□ -2.27
RPH1P39956 SDH6YDR379C-A 240 nt0.87□□□□□ -2.27
RPH1P39956 YDR544CYDR544C 429 nt0.87□□□□□ -2.27
RPH1P39956 YHR131W-AYHR131W-A 246 nt0.87□□□□□ -2.27
RPH1P39956 YIL142C-AYIL142C-A 333 nt0.87□□□□□ -2.27
RPH1P39956 YOR329W-AYOR329W-A 210 nt0.86□□□□□ -2.27
RPH1P39956 RKR1YMR247C 4689 nt0.85□□□□□ -2.27
RPH1P39956 UTP20YBL004W 7482 nt0.85□□□□□ -2.27
RPH1P39956 BEM3YPL115C 3387 nt0.82□□□□□ -2.28
RPH1P39956 QCR9YGR183C 201 nt0.8□□□□□ -2.28
RPH1P39956 snR39BsnR39B 96 nt0.8□□□□□ -2.28
RPH1P39956 YDL073WYDL073W 2955 nt0.8□□□□□ -2.28
RPH1P39956 OST4YDL232W 111 nt0.79□□□□□ -2.28
RPH1P39956 tM(CAU)Q2tM(CAU)Q2 78 nt0.78□□□□□ -2.28
RPH1P39956 COG6YNL041C 2520 nt0.77□□□□□ -2.29
RPH1P39956 YSP1YHR155W 3687 nt0.77□□□□□ -2.29
RPH1P39956 YNL067W-BYNL067W-B 141 nt0.77□□□□□ -2.29
RPH1P39956 YCL001W-BYCL001W-B 255 nt0.76□□□□□ -2.29
RPH1P39956 YMR160WYMR160W 2451 nt0.76□□□□□ -2.29
RPH1P39956 YDR210WYDR210W 228 nt0.74□□□□□ -2.29
RPH1P39956 SEC1YDR164C 2175 nt0.73□□□□□ -2.29
RPH1P39956 tT(AGU)BtT(AGU)B 73 nt0.73□□□□□ -2.29
RPH1P39956 tT(AGU)CtT(AGU)C 73 nt0.73□□□□□ -2.29
RPH1P39956 tT(AGU)DtT(AGU)D 73 nt0.73□□□□□ -2.29
RPH1P39956 tT(AGU)HtT(AGU)H 73 nt0.73□□□□□ -2.29
RPH1P39956 tT(AGU)I1tT(AGU)I1 73 nt0.73□□□□□ -2.29
RPH1P39956 tT(AGU)I2tT(AGU)I2 73 nt0.73□□□□□ -2.29
RPH1P39956 tT(AGU)JtT(AGU)J 73 nt0.73□□□□□ -2.29
RPH1P39956 tT(AGU)N1tT(AGU)N1 73 nt0.73□□□□□ -2.29
RPH1P39956 tT(AGU)N2tT(AGU)N2 73 nt0.73□□□□□ -2.29
RPH1P39956 tT(AGU)O1tT(AGU)O1 73 nt0.73□□□□□ -2.29
RPH1P39956 tT(AGU)O2tT(AGU)O2 73 nt0.73□□□□□ -2.29
RPH1P39956 YBR072C-AYBR072C-A 162 nt0.73□□□□□ -2.29
RPH1P39956 YJL127W-AYJL127W-A 117 nt0.71□□□□□ -2.3
RPH1P39956 YIL071W-AYIL071W-A 477 nt0.69□□□□□ -2.3
RPH1P39956 YLL006W-AYLL006W-A 177 nt0.69□□□□□ -2.3
RPH1P39956 GLG1YKR058W 1851 nt0.69□□□□□ -2.3
RPH1P39956 YOR192C-BYOR192C-B 5313 nt0.68□□□□□ -2.3
RPH1P39956 MYO1YHR023W 5787 nt0.68□□□□□ -2.3
RPH1P39956 NNF2YGR089W 2811 nt0.68□□□□□ -2.3
RPH1P39956 tF(GAA)BtF(GAA)B 73 nt0.67□□□□□ -2.3
RPH1P39956 tF(GAA)FtF(GAA)F 73 nt0.67□□□□□ -2.3
RPH1P39956 tF(GAA)GtF(GAA)G 73 nt0.67□□□□□ -2.3
RPH1P39956 tF(GAA)H1tF(GAA)H1 73 nt0.67□□□□□ -2.3
RPH1P39956 tF(GAA)H2tF(GAA)H2 73 nt0.67□□□□□ -2.3
RPH1P39956 tF(GAA)MtF(GAA)M 73 nt0.67□□□□□ -2.3
RPH1P39956 tF(GAA)P1tF(GAA)P1 73 nt0.67□□□□□ -2.3
RPH1P39956 tF(GAA)P2tF(GAA)P2 73 nt0.67□□□□□ -2.3
RPH1P39956 SOM1YEL059C-A 225 nt0.67□□□□□ -2.3
RPH1P39956 ULP2YIL031W 3105 nt0.66□□□□□ -2.3
RPH1P39956 YCR095W-AYCR095W-A 159 nt0.66□□□□□ -2.3
RPH1P39956 YGR146C-AYGR146C-A 162 nt0.66□□□□□ -2.3
Retrieved 100 of 7,029 protein–RNA pairs in 65.9 ms