Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV40A0A0B4J280 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV40A0A0B4J280 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV40A0A0B4J280 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV40A0A0B4J280 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.33■□□□□ 0.21
TRAV40A0A0B4J280 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV40A0A0B4J280 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV40A0A0B4J280 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV40A0A0B4J280 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV40A0A0B4J280 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 SNORA78-201ENST00000459373 127 ntBASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 AC133681.1-201ENST00000465482 601 ntBASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 AC110285.5-201ENST00000611501 352 ntBASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV40A0A0B4J280 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 HLA-G-202ENST00000376815 851 ntBASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 HLA-G-203ENST00000376818 1127 ntBASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 Z99916.2-201ENST00000604037 246 ntBASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 AL121906.2-201ENST00000621597 723 ntBASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 AC006128.1-201ENST00000624704 1661 ntBASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV40A0A0B4J280 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 CABP2-204ENST00000636477 941 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV40A0A0B4J280 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 AC012618.2-201ENST00000428058 849 ntBASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 MIR4497-201ENST00000583208 89 ntBASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV40A0A0B4J280 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms