Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.7■■□□□ 1.06
KRT39Q6A163 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.7■■□□□ 1.06
KRT39Q6A163 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT39Q6A163 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
KRT39Q6A163 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT39Q6A163 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT39Q6A163 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
KRT39Q6A163 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
KRT39Q6A163 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
KRT39Q6A163 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.7■■□□□ 1.06
KRT39Q6A163 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.7■■□□□ 1.06
KRT39Q6A163 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.7■■□□□ 1.06
KRT39Q6A163 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.7■■□□□ 1.06
KRT39Q6A163 AC091874.3-201ENST00000512672 1195 ntBASIC21.7■■□□□ 1.06
KRT39Q6A163 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.7■■□□□ 1.06
KRT39Q6A163 AL138781.1-201ENST00000566567 1274 ntBASIC21.7■■□□□ 1.06
KRT39Q6A163 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.7■■□□□ 1.06
KRT39Q6A163 AL031963.3-201ENST00000606441 850 ntBASIC21.7■■□□□ 1.06
KRT39Q6A163 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
KRT39Q6A163 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT39Q6A163 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.7■■□□□ 1.06
KRT39Q6A163 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
KRT39Q6A163 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.7■■□□□ 1.06
KRT39Q6A163 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
KRT39Q6A163 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
KRT39Q6A163 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
KRT39Q6A163 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.69■■□□□ 1.06
KRT39Q6A163 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
KRT39Q6A163 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT39Q6A163 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.69■■□□□ 1.06
KRT39Q6A163 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT39Q6A163 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
KRT39Q6A163 AC023632.3-201ENST00000521633 145 ntBASIC21.69■■□□□ 1.06
KRT39Q6A163 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.69■■□□□ 1.06
KRT39Q6A163 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.69■■□□□ 1.06
KRT39Q6A163 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
KRT39Q6A163 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT39Q6A163 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT39Q6A163 KRT8P20-201ENST00000423953 1409 ntBASIC21.69■■□□□ 1.06
KRT39Q6A163 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT39Q6A163 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT39Q6A163 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT39Q6A163 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT39Q6A163 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
KRT39Q6A163 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
KRT39Q6A163 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.68■■□□□ 1.06
KRT39Q6A163 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.68■■□□□ 1.06
KRT39Q6A163 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT39Q6A163 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT39Q6A163 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT39Q6A163 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
KRT39Q6A163 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.68■■□□□ 1.06
KRT39Q6A163 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.68■■□□□ 1.06
KRT39Q6A163 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.68■■□□□ 1.06
KRT39Q6A163 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.68■■□□□ 1.06
KRT39Q6A163 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT39Q6A163 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT39Q6A163 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
KRT39Q6A163 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
KRT39Q6A163 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
KRT39Q6A163 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.68■■□□□ 1.06
KRT39Q6A163 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
KRT39Q6A163 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT39Q6A163 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
KRT39Q6A163 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT39Q6A163 TCF3P1-201ENST00000423021 1937 ntBASIC21.67■■□□□ 1.06
KRT39Q6A163 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
KRT39Q6A163 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT39Q6A163 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT39Q6A163 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
KRT39Q6A163 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT39Q6A163 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC21.67■■□□□ 1.06
KRT39Q6A163 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.67■■□□□ 1.06
KRT39Q6A163 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
KRT39Q6A163 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT39Q6A163 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.67■■□□□ 1.06
KRT39Q6A163 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT39Q6A163 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
KRT39Q6A163 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.66■■□□□ 1.06
KRT39Q6A163 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.66■■□□□ 1.06
KRT39Q6A163 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
KRT39Q6A163 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
KRT39Q6A163 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
KRT39Q6A163 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT39Q6A163 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT39Q6A163 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.66■■□□□ 1.06
KRT39Q6A163 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT39Q6A163 HLA-G-202ENST00000376815 851 ntBASIC21.66■■□□□ 1.06
KRT39Q6A163 HLA-G-203ENST00000376818 1127 ntBASIC21.66■■□□□ 1.06
KRT39Q6A163 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.66■■□□□ 1.06
KRT39Q6A163 AC073210.2-201ENST00000430369 194 ntBASIC21.66■■□□□ 1.06
KRT39Q6A163 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT39Q6A163 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
KRT39Q6A163 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.66■■□□□ 1.06
KRT39Q6A163 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT39Q6A163 AC142086.2-201ENST00000569753 217 ntBASIC21.66■■□□□ 1.06
KRT39Q6A163 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.66■■□□□ 1.06
KRT39Q6A163 MYC-209ENST00000641252 345 ntBASIC21.66■■□□□ 1.06
KRT39Q6A163 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
KRT39Q6A163 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms