Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC245177.1-201ENST00000375625 2369 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC239585.1-201ENST00000375644 2369 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 AC009318.1-201ENST00000553105 2380 ntTSL 2 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 RIOK2-201ENST00000283109 3922 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 CACNB4-263ENST00000637779 1772 ntTSL 5 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 KRT23-202ENST00000436344 1485 ntTSL 2 BASIC9.01□□□□□ -0.97
HLA-DOAP06340 PCBP2-206ENST00000455667 2741 ntAPPRIS ALT1 TSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
HLA-DOAP06340 RCAN1-205ENST00000443408 2315 ntTSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 AC022150.4-201ENST00000598322 2848 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 AC106712.1-201ENST00000483840 1888 ntTSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 LINC01091-204ENST00000515769 2204 ntTSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC9□□□□□ -0.97
HLA-DOAP06340 CWC15-201ENST00000279839 1576 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 TPD52-202ENST00000379097 2563 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 ASPH-230ENST00000541428 2550 ntAPPRIS ALT2 TSL 2 BASIC9□□□□□ -0.97
HLA-DOAP06340 CD101-201ENST00000256652 3283 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
HLA-DOAP06340 CABYR-206ENST00000463087 1792 ntAPPRIS P4 TSL 5 BASIC9□□□□□ -0.97
HLA-DOAP06340 RNA5SP260-201ENST00000363849 111 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 NPL-202ENST00000367552 745 ntTSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 RORB-202ENST00000396204 2996 ntTSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 RCAN3-203ENST00000412742 667 ntTSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 GTF2F2P2-201ENST00000445825 721 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 CDC42P2-201ENST00000448566 569 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 AL157400.2-201ENST00000454174 563 ntTSL 2 BASIC9□□□□□ -0.97
HLA-DOAP06340 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC9□□□□□ -0.97
HLA-DOAP06340 NDUFB4P1-201ENST00000462398 381 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC9□□□□□ -0.97
HLA-DOAP06340 AP004833.1-201ENST00000507987 1238 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC9□□□□□ -0.97
HLA-DOAP06340 AAMDC-203ENST00000525034 511 ntTSL 3 BASIC9□□□□□ -0.97
HLA-DOAP06340 CASP1P2-201ENST00000526830 1258 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 AC115676.1-201ENST00000538416 329 ntTSL 3 BASIC9□□□□□ -0.97
HLA-DOAP06340 AC093334.1-201ENST00000559904 423 ntTSL 3 BASIC9□□□□□ -0.97
HLA-DOAP06340 TRIM69-210ENST00000561043 1017 ntTSL 3 BASIC9□□□□□ -0.97
HLA-DOAP06340 MRPS5P4-201ENST00000592830 325 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC9□□□□□ -0.97
HLA-DOAP06340 AC024451.4-201ENST00000602578 752 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 FRG2MP-201ENST00000613317 856 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 pRNA.9-201ENST00000618609 89 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC9□□□□□ -0.97
HLA-DOAP06340 LINC02208-201ENST00000506769 2803 ntTSL 5 BASIC9□□□□□ -0.97
HLA-DOAP06340 LINC01915-201ENST00000577994 2321 ntTSL 2 BASIC9□□□□□ -0.97
HLA-DOAP06340 WASF5P-205ENST00000428639 1455 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 BCLAF1-223ENST00000628517 2512 ntTSL 5 BASIC9□□□□□ -0.97
HLA-DOAP06340 ZMYND8-218ENST00000540497 3405 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 PSMC1P7-201ENST00000495689 1315 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 QRSL1P3-201ENST00000552666 1316 ntBASIC9□□□□□ -0.97
HLA-DOAP06340 SLC9A6-214ENST00000637581 4872 ntTSL 5 BASIC9□□□□□ -0.97
HLA-DOAP06340 NLRP3-202ENST00000348069 3828 ntTSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC9□□□□□ -0.97
HLA-DOAP06340 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
HLA-DOAP06340 KIF15-201ENST00000326047 4842 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
HLA-DOAP06340 ATF2-203ENST00000392544 1919 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
HLA-DOAP06340 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 SOCS5P5-201ENST00000402732 1586 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC8.99□□□□□ -0.97
HLA-DOAP06340 DNAH10-209ENST00000614082 3484 ntTSL 5 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC091152.4-201ENST00000623480 3483 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
HLA-DOAP06340 DAZ2-208ENST00000400493 3516 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
HLA-DOAP06340 SOSTDC1-202ENST00000396652 2411 ntTSL 2 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 YAF2-201ENST00000327791 4156 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
HLA-DOAP06340 SNORA73B-201ENST00000363217 204 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 RNA5SP355-201ENST00000365317 135 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 SNORA2C-201ENST00000408564 137 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 AL390856.1-201ENST00000412174 628 ntTSL 2 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 GSTA10P-201ENST00000412182 576 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 AL138479.1-201ENST00000426913 484 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC105052.2-201ENST00000434317 794 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC008620.1-201ENST00000468453 592 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 SUMO2P17-201ENST00000504438 285 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC016559.1-201ENST00000511420 199 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC017007.5-201ENST00000511590 874 ntTSL 2 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 IGHVII-49-1-201ENST00000521760 224 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC011410.1-201ENST00000524175 705 ntTSL 5 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC023595.1-201ENST00000536216 564 ntTSL 4 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 COX4I1P1-201ENST00000554239 509 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC010333.1-201ENST00000563116 563 ntTSL 4 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC016629.2-201ENST00000597341 199 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC005518.2-201ENST00000603254 282 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC108451.2-201ENST00000603875 538 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 AL161729.2-201ENST00000605700 456 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 CUX2P1-201ENST00000606426 298 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 MALAT1-208ENST00000616527 572 ntTSL 3 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 METAP1-212ENST00000625963 147 ntTSL 5 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 AC091132.4-201ENST00000587960 2262 ntBASIC8.99□□□□□ -0.97
HLA-DOAP06340 ZNF790-208ENST00000615484 2451 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 BCAT1-202ENST00000342945 4319 ntTSL 2 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 KRIT1-203ENST00000394505 3143 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
HLA-DOAP06340 LINC01829-202ENST00000433133 2100 ntTSL 2 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 NOX1-201ENST00000217885 1734 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
HLA-DOAP06340 NSD2-224ENST00000514045 3964 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
HLA-DOAP06340 RBM5-201ENST00000347869 3188 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
HLA-DOAP06340 TBX22-202ENST00000373296 2355 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
HLA-DOAP06340 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms