Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 AC113347.1-201ENST00000413321 391 ntBASIC19.31■□□□□ 0.68
COL28A1Q2UY09 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL28A1Q2UY09 AC244015.2-201ENST00000616358 1861 ntBASIC19.31■□□□□ 0.68
COL28A1Q2UY09 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 AC091799.1-201ENST00000422823 811 ntBASIC19.3■□□□□ 0.68
COL28A1Q2UY09 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 AC092667.1-201ENST00000434301 2586 ntBASIC19.3■□□□□ 0.68
COL28A1Q2UY09 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL28A1Q2UY09 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL28A1Q2UY09 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 DUX4L26-201ENST00000489078 1255 ntBASIC19.28■□□□□ 0.68
COL28A1Q2UY09 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.28■□□□□ 0.68
COL28A1Q2UY09 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.28■□□□□ 0.68
COL28A1Q2UY09 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL28A1Q2UY09 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms