Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PEX3P56589 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC22.18■■□□□ 1.14
PEX3P56589 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC22.18■■□□□ 1.14
PEX3P56589 LINC01006-201ENST00000333319 2292 ntBASIC22.18■■□□□ 1.14
PEX3P56589 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
PEX3P56589 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
PEX3P56589 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PEX3P56589 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
PEX3P56589 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PEX3P56589 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
PEX3P56589 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
PEX3P56589 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PEX3P56589 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC22.18■■□□□ 1.14
PEX3P56589 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
PEX3P56589 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC22.18■■□□□ 1.14
PEX3P56589 AC023632.3-201ENST00000521633 145 ntBASIC22.18■■□□□ 1.14
PEX3P56589 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC22.18■■□□□ 1.14
PEX3P56589 AC005829.2-201ENST00000571422 1056 ntBASIC22.18■■□□□ 1.14
PEX3P56589 AC006557.6-201ENST00000623071 864 ntBASIC22.18■■□□□ 1.14
PEX3P56589 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PEX3P56589 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PEX3P56589 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
PEX3P56589 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
PEX3P56589 GABARAPL3-202ENST00000624044 1851 ntBASIC22.17■■□□□ 1.14
PEX3P56589 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC22.17■■□□□ 1.14
PEX3P56589 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC22.17■■□□□ 1.14
PEX3P56589 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
PEX3P56589 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
PEX3P56589 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC22.17■■□□□ 1.14
PEX3P56589 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PEX3P56589 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PEX3P56589 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PEX3P56589 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC22.17■■□□□ 1.14
PEX3P56589 TSPY20P-201ENST00000450910 630 ntBASIC22.17■■□□□ 1.14
PEX3P56589 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC22.17■■□□□ 1.14
PEX3P56589 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.17■■□□□ 1.14
PEX3P56589 OR2A1-AS1-207ENST00000486094 819 ntBASIC22.17■■□□□ 1.14
PEX3P56589 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC22.17■■□□□ 1.14
PEX3P56589 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PEX3P56589 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC22.17■■□□□ 1.14
PEX3P56589 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC22.17■■□□□ 1.14
PEX3P56589 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
PEX3P56589 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC22.17■■□□□ 1.14
PEX3P56589 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
PEX3P56589 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
PEX3P56589 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
PEX3P56589 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.16■■□□□ 1.14
PEX3P56589 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
PEX3P56589 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
PEX3P56589 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC22.16■■□□□ 1.14
PEX3P56589 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 SOX15-203ENST00000570788 1093 ntBASIC22.16■■□□□ 1.14
PEX3P56589 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC22.16■■□□□ 1.14
PEX3P56589 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC22.16■■□□□ 1.14
PEX3P56589 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC22.16■■□□□ 1.14
PEX3P56589 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
PEX3P56589 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
PEX3P56589 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC22.16■■□□□ 1.14
PEX3P56589 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 AL512408.1-201ENST00000569378 2000 ntBASIC22.16■■□□□ 1.14
PEX3P56589 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PEX3P56589 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
PEX3P56589 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC22.15■■□□□ 1.14
PEX3P56589 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
PEX3P56589 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC22.15■■□□□ 1.14
PEX3P56589 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
PEX3P56589 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
PEX3P56589 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC22.15■■□□□ 1.14
PEX3P56589 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC22.15■■□□□ 1.14
PEX3P56589 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PEX3P56589 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
PEX3P56589 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
PEX3P56589 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC22.15■■□□□ 1.14
PEX3P56589 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PEX3P56589 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
PEX3P56589 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PEX3P56589 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
PEX3P56589 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
PEX3P56589 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
PEX3P56589 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
PEX3P56589 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PEX3P56589 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
PEX3P56589 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PEX3P56589 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PEX3P56589 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PEX3P56589 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PEX3P56589 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms