Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Pcdh1F7BJK1 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Pcdh1F7BJK1 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Pcdh1F7BJK1 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Gm13509-201ENSMUST00000119733 1308 ntBASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Gm8495-201ENSMUST00000188740 694 ntBASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Pcdh1F7BJK1 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 AC108858.1-201ENSMUST00000228461 1498 ntBASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Gm37166-201ENSMUST00000195473 2474 ntBASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Pcdh1F7BJK1 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 AV356131-201ENSMUST00000206201 750 ntBASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Gm37820-201ENSMUST00000194021 2147 ntBASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Pcdh1F7BJK1 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Shroom3-211ENSMUST00000225438 5742 ntBASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Pcdh1F7BJK1 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Pcdh1F7BJK1 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms