Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF220Q5VTB9 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF220Q5VTB9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF220Q5VTB9 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.36■□□□□ 0.69
RNF220Q5VTB9 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RNF220Q5VTB9 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 TPRG1LP1-201ENST00000598702 760 ntBASIC19.35■□□□□ 0.69
RNF220Q5VTB9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.35■□□□□ 0.69
RNF220Q5VTB9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 AC120498.9-201ENST00000339021 3867 ntBASIC19.34■□□□□ 0.69
RNF220Q5VTB9 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.34■□□□□ 0.69
RNF220Q5VTB9 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.33■□□□□ 0.69
RNF220Q5VTB9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF220Q5VTB9 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF220Q5VTB9 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.33■□□□□ 0.69
RNF220Q5VTB9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF220Q5VTB9 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF220Q5VTB9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF220Q5VTB9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.69
RNF220Q5VTB9 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RNF220Q5VTB9 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.33■□□□□ 0.69
RNF220Q5VTB9 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
RNF220Q5VTB9 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
RNF220Q5VTB9 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 AC005837.3-201ENST00000612163 286 ntBASIC19.32■□□□□ 0.68
RNF220Q5VTB9 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.32■□□□□ 0.68
RNF220Q5VTB9 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms