Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIM2P55344 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIM2P55344 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.16■□□□□ 0.66
LIM2P55344 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIM2P55344 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.16■□□□□ 0.66
LIM2P55344 AL138781.1-201ENST00000566567 1274 ntBASIC19.16■□□□□ 0.66
LIM2P55344 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.16■□□□□ 0.66
LIM2P55344 AC092118.2-201ENST00000613495 667 ntBASIC19.16■□□□□ 0.66
LIM2P55344 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIM2P55344 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.16■□□□□ 0.66
LIM2P55344 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.16■□□□□ 0.66
LIM2P55344 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.16■□□□□ 0.66
LIM2P55344 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.16■□□□□ 0.66
LIM2P55344 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.16■□□□□ 0.66
LIM2P55344 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIM2P55344 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIM2P55344 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIM2P55344 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.15■□□□□ 0.66
LIM2P55344 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.15■□□□□ 0.66
LIM2P55344 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIM2P55344 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIM2P55344 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.15■□□□□ 0.66
LIM2P55344 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.15■□□□□ 0.66
LIM2P55344 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIM2P55344 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
LIM2P55344 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.15■□□□□ 0.66
LIM2P55344 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.15■□□□□ 0.66
LIM2P55344 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.15■□□□□ 0.66
LIM2P55344 MIR4758-201ENST00000577688 71 ntBASIC19.15■□□□□ 0.66
LIM2P55344 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.15■□□□□ 0.66
LIM2P55344 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
LIM2P55344 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.15■□□□□ 0.66
LIM2P55344 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
LIM2P55344 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LIM2P55344 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIM2P55344 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIM2P55344 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LIM2P55344 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIM2P55344 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIM2P55344 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIM2P55344 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.14■□□□□ 0.66
LIM2P55344 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIM2P55344 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIM2P55344 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.14■□□□□ 0.65
LIM2P55344 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
LIM2P55344 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.14■□□□□ 0.65
LIM2P55344 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.14■□□□□ 0.65
LIM2P55344 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.14■□□□□ 0.65
LIM2P55344 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
LIM2P55344 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIM2P55344 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
LIM2P55344 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIM2P55344 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIM2P55344 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIM2P55344 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.14■□□□□ 0.65
LIM2P55344 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIM2P55344 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIM2P55344 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIM2P55344 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
LIM2P55344 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.13■□□□□ 0.65
LIM2P55344 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.13■□□□□ 0.65
LIM2P55344 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.13■□□□□ 0.65
LIM2P55344 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.13■□□□□ 0.65
LIM2P55344 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.13■□□□□ 0.65
LIM2P55344 AC142086.2-201ENST00000569753 217 ntBASIC19.13■□□□□ 0.65
LIM2P55344 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.13■□□□□ 0.65
LIM2P55344 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.13■□□□□ 0.65
LIM2P55344 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.13■□□□□ 0.65
LIM2P55344 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.13■□□□□ 0.65
LIM2P55344 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIM2P55344 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIM2P55344 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.13■□□□□ 0.65
LIM2P55344 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
LIM2P55344 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
LIM2P55344 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIM2P55344 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIM2P55344 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIM2P55344 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
LIM2P55344 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
LIM2P55344 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIM2P55344 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIM2P55344 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIM2P55344 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIM2P55344 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIM2P55344 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIM2P55344 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIM2P55344 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
LIM2P55344 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIM2P55344 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.12■□□□□ 0.65
LIM2P55344 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
LIM2P55344 AL355802.2-201ENST00000402069 882 ntBASIC19.12■□□□□ 0.65
LIM2P55344 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
LIM2P55344 DUSP5P2-201ENST00000426873 1033 ntBASIC19.12■□□□□ 0.65
LIM2P55344 C2orf69P4-201ENST00000565394 541 ntBASIC19.12■□□□□ 0.65
LIM2P55344 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.12■□□□□ 0.65
LIM2P55344 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
LIM2P55344 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIM2P55344 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
LIM2P55344 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
LIM2P55344 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms