Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 AL691432.2-201ENST00000607222 2038 ntBASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 KRT19P1-201ENST00000405746 1186 ntBASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ATG4AQ8WYN0 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
ATG4AQ8WYN0 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
ATG4AQ8WYN0 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 FAM21FP-204ENST00000608637 956 ntBASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 MYCNOS-205ENST00000641950 531 ntBASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
ATG4AQ8WYN0 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATG4AQ8WYN0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATG4AQ8WYN0 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATG4AQ8WYN0 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.9■□□□□ 0.94
ATG4AQ8WYN0 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms