Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
MSH4O15457 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC22.76■■□□□ 1.23
MSH4O15457 AC073314.1-201ENST00000568729 2216 ntBASIC22.76■■□□□ 1.23
MSH4O15457 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 DPP3P2-201ENST00000416030 1696 ntBASIC22.75■■□□□ 1.23
MSH4O15457 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC22.75■■□□□ 1.23
MSH4O15457 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC22.75■■□□□ 1.23
MSH4O15457 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC22.75■■□□□ 1.23
MSH4O15457 ESRRAP1-201ENST00000400596 1257 ntBASIC22.75■■□□□ 1.23
MSH4O15457 GGT1-206ENST00000404223 952 ntTSL 2 BASIC22.75■■□□□ 1.23
MSH4O15457 POU5F1P3-201ENST00000428824 1078 ntBASIC22.75■■□□□ 1.23
MSH4O15457 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC22.75■■□□□ 1.23
MSH4O15457 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 OR2A1-AS1-207ENST00000486094 819 ntBASIC22.75■■□□□ 1.23
MSH4O15457 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 SOX15-203ENST00000570788 1093 ntBASIC22.75■■□□□ 1.23
MSH4O15457 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC22.75■■□□□ 1.23
MSH4O15457 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC22.75■■□□□ 1.23
MSH4O15457 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC22.75■■□□□ 1.23
MSH4O15457 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
MSH4O15457 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC22.75■■□□□ 1.23
MSH4O15457 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
MSH4O15457 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH4O15457 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH4O15457 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
MSH4O15457 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
MSH4O15457 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.74■■□□□ 1.23
MSH4O15457 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC22.74■■□□□ 1.23
MSH4O15457 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
MSH4O15457 AC026366.1-201ENST00000488803 879 ntBASIC22.74■■□□□ 1.23
MSH4O15457 UNC93B4-201ENST00000505679 747 ntBASIC22.74■■□□□ 1.23
MSH4O15457 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH4O15457 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC22.74■■□□□ 1.23
MSH4O15457 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH4O15457 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
MSH4O15457 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
MSH4O15457 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.73■■□□□ 1.23
MSH4O15457 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH4O15457 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH4O15457 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH4O15457 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC22.73■■□□□ 1.23
MSH4O15457 AC023632.3-201ENST00000521633 145 ntBASIC22.73■■□□□ 1.23
MSH4O15457 ADM-205ENST00000528544 586 ntTSL 2 BASIC22.73■■□□□ 1.23
MSH4O15457 AP003097.1-201ENST00000530657 1135 ntBASIC22.73■■□□□ 1.23
MSH4O15457 KLF2-202ENST00000592003 564 ntTSL 3 BASIC22.73■■□□□ 1.23
MSH4O15457 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC22.73■■□□□ 1.23
MSH4O15457 AC006557.6-201ENST00000623071 864 ntBASIC22.73■■□□□ 1.23
MSH4O15457 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
MSH4O15457 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.73■■□□□ 1.23
MSH4O15457 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC22.73■■□□□ 1.23
MSH4O15457 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
MSH4O15457 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC22.72■■□□□ 1.23
MSH4O15457 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.72■■□□□ 1.23
MSH4O15457 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.72■■□□□ 1.23
MSH4O15457 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH4O15457 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
MSH4O15457 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC22.72■■□□□ 1.23
MSH4O15457 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC22.72■■□□□ 1.23
MSH4O15457 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH4O15457 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
MSH4O15457 FEM1AP1-201ENST00000431297 1995 ntBASIC22.72■■□□□ 1.23
MSH4O15457 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH4O15457 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH4O15457 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC22.72■■□□□ 1.23
MSH4O15457 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC22.72■■□□□ 1.23
MSH4O15457 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC22.72■■□□□ 1.23
MSH4O15457 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH4O15457 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
MSH4O15457 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 AC020907.5-201ENST00000624372 1936 ntBASIC22.71■■□□□ 1.23
MSH4O15457 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH4O15457 AP005212.1-201ENST00000581547 1997 ntBASIC22.71■■□□□ 1.23
MSH4O15457 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
MSH4O15457 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 FAM201B-201ENST00000458407 597 ntBASIC22.71■■□□□ 1.23
MSH4O15457 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH4O15457 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC22.71■■□□□ 1.23
MSH4O15457 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH4O15457 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH4O15457 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.71■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms