Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Col28a1Q2UY11 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Col28a1Q2UY11 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col28a1Q2UY11 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Col28a1Q2UY11 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.33
Col28a1Q2UY11 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Col28a1Q2UY11 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Col28a1Q2UY11 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Col28a1Q2UY11 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col28a1Q2UY11 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col28a1Q2UY11 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col28a1Q2UY11 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col28a1Q2UY11 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col28a1Q2UY11 Gm4968-201ENSMUST00000071458 858 ntBASIC17.06■□□□□ 0.32
Col28a1Q2UY11 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Col28a1Q2UY11 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Col28a1Q2UY11 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC17.06■□□□□ 0.32
Col28a1Q2UY11 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Col28a1Q2UY11 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Col28a1Q2UY11 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Idnk-204ENSMUST00000226010 1898 ntBASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Col28a1Q2UY11 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col28a1Q2UY11 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms