Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LMX1BO60663 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LMX1BO60663 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.79■□□□□ 0.44
LMX1BO60663 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.79■□□□□ 0.44
LMX1BO60663 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.79■□□□□ 0.44
LMX1BO60663 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1BO60663 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1BO60663 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1BO60663 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1BO60663 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
LMX1BO60663 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1BO60663 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.79■□□□□ 0.44
LMX1BO60663 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.79■□□□□ 0.44
LMX1BO60663 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
LMX1BO60663 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
LMX1BO60663 SLC7A5P2-201ENST00000553010 536 ntBASIC17.79■□□□□ 0.44
LMX1BO60663 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.79■□□□□ 0.44
LMX1BO60663 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.79■□□□□ 0.44
LMX1BO60663 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.79■□□□□ 0.44
LMX1BO60663 AC066615.1-201ENST00000640911 628 ntBASIC17.79■□□□□ 0.44
LMX1BO60663 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1BO60663 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
LMX1BO60663 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
LMX1BO60663 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.79■□□□□ 0.44
LMX1BO60663 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1BO60663 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.79■□□□□ 0.44
LMX1BO60663 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1BO60663 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
LMX1BO60663 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LMX1BO60663 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LMX1BO60663 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1BO60663 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.78■□□□□ 0.44
LMX1BO60663 DUX4L16-201ENST00000555130 1264 ntBASIC17.78■□□□□ 0.44
LMX1BO60663 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.78■□□□□ 0.44
LMX1BO60663 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1BO60663 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.78■□□□□ 0.44
LMX1BO60663 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.78■□□□□ 0.44
LMX1BO60663 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.78■□□□□ 0.44
LMX1BO60663 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1BO60663 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1BO60663 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LMX1BO60663 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
LMX1BO60663 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1BO60663 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1BO60663 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1BO60663 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1BO60663 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.77■□□□□ 0.44
LMX1BO60663 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.77■□□□□ 0.44
LMX1BO60663 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1BO60663 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.77■□□□□ 0.44
LMX1BO60663 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.77■□□□□ 0.44
LMX1BO60663 AC010141.2-201ENST00000452426 721 ntBASIC17.77■□□□□ 0.44
LMX1BO60663 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.77■□□□□ 0.44
LMX1BO60663 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.77■□□□□ 0.44
LMX1BO60663 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.77■□□□□ 0.44
LMX1BO60663 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.77■□□□□ 0.44
LMX1BO60663 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.77■□□□□ 0.44
LMX1BO60663 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1BO60663 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.77■□□□□ 0.44
LMX1BO60663 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1BO60663 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1BO60663 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LMX1BO60663 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.77■□□□□ 0.44
LMX1BO60663 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LMX1BO60663 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
LMX1BO60663 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LMX1BO60663 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.76■□□□□ 0.43
LMX1BO60663 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.76■□□□□ 0.43
LMX1BO60663 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.76■□□□□ 0.43
LMX1BO60663 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.76■□□□□ 0.43
LMX1BO60663 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LMX1BO60663 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.76■□□□□ 0.43
LMX1BO60663 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.76■□□□□ 0.43
LMX1BO60663 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LMX1BO60663 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LMX1BO60663 UBE2DNL-204ENST00000602536 740 ntBASIC17.76■□□□□ 0.43
LMX1BO60663 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.76■□□□□ 0.43
LMX1BO60663 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
LMX1BO60663 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 AC092720.2-201ENST00000602388 1665 ntBASIC17.76■□□□□ 0.43
LMX1BO60663 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LMX1BO60663 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.76■□□□□ 0.43
LMX1BO60663 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.76■□□□□ 0.43
LMX1BO60663 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
LMX1BO60663 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LMX1BO60663 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.75■□□□□ 0.43
LMX1BO60663 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.75■□□□□ 0.43
LMX1BO60663 KRT16P2-201ENST00000414673 1423 ntBASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms