Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A5A8TX70 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC16.04■□□□□ 0.16
COL6A5A8TX70 AC003102.1-202ENST00000563394 1796 ntBASIC16.04■□□□□ 0.16
COL6A5A8TX70 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC16.04■□□□□ 0.16
COL6A5A8TX70 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
COL6A5A8TX70 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.04■□□□□ 0.16
COL6A5A8TX70 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.04■□□□□ 0.16
COL6A5A8TX70 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.04■□□□□ 0.16
COL6A5A8TX70 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A5A8TX70 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A5A8TX70 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL6A5A8TX70 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A5A8TX70 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A5A8TX70 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A5A8TX70 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A5A8TX70 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A5A8TX70 AC007322.3-201ENST00000426526 701 ntBASIC16.03■□□□□ 0.16
COL6A5A8TX70 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.03■□□□□ 0.16
COL6A5A8TX70 AC004264.1-201ENST00000608354 794 ntBASIC16.03■□□□□ 0.16
COL6A5A8TX70 LTK-203ENST00000453182 2412 ntTSL 2 BASIC16.03■□□□□ 0.16
COL6A5A8TX70 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A5A8TX70 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A5A8TX70 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC16.03■□□□□ 0.16
COL6A5A8TX70 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A5A8TX70 EED-207ENST00000528180 1745 ntTSL 5 BASIC16.03■□□□□ 0.16
COL6A5A8TX70 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC16.03■□□□□ 0.16
COL6A5A8TX70 TSPY14P-201ENST00000303979 915 ntBASIC16.03■□□□□ 0.16
COL6A5A8TX70 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.03■□□□□ 0.16
COL6A5A8TX70 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.03■□□□□ 0.16
COL6A5A8TX70 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC16.03■□□□□ 0.16
COL6A5A8TX70 AC010203.1-204ENST00000548782 407 ntBASIC16.03■□□□□ 0.16
COL6A5A8TX70 AL121829.2-201ENST00000620908 328 ntBASIC16.03■□□□□ 0.16
COL6A5A8TX70 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A5A8TX70 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A5A8TX70 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC16.03■□□□□ 0.16
COL6A5A8TX70 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL6A5A8TX70 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.02■□□□□ 0.16
COL6A5A8TX70 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.02■□□□□ 0.16
COL6A5A8TX70 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.02■□□□□ 0.16
COL6A5A8TX70 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.02■□□□□ 0.16
COL6A5A8TX70 KSR1P1-201ENST00000446298 240 ntBASIC16.02■□□□□ 0.16
COL6A5A8TX70 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A5A8TX70 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.16
COL6A5A8TX70 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.02■□□□□ 0.16
COL6A5A8TX70 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.02■□□□□ 0.16
COL6A5A8TX70 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.02■□□□□ 0.16
COL6A5A8TX70 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A5A8TX70 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
COL6A5A8TX70 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL6A5A8TX70 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL6A5A8TX70 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.02■□□□□ 0.15
COL6A5A8TX70 AC093458.2-201ENST00000623150 629 ntBASIC16.02■□□□□ 0.15
COL6A5A8TX70 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL6A5A8TX70 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
COL6A5A8TX70 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL6A5A8TX70 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC16.01■□□□□ 0.15
COL6A5A8TX70 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A5A8TX70 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 AP005242.2-201ENST00000580065 1175 ntBASIC16.01■□□□□ 0.15
COL6A5A8TX70 AC011558.1-201ENST00000623459 338 ntBASIC16.01■□□□□ 0.15
COL6A5A8TX70 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 C11orf96-202ENST00000528572 1834 ntBASIC16.01■□□□□ 0.15
COL6A5A8TX70 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
COL6A5A8TX70 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A5A8TX70 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A5A8TX70 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.01■□□□□ 0.15
COL6A5A8TX70 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.01■□□□□ 0.15
COL6A5A8TX70 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
COL6A5A8TX70 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL6A5A8TX70 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16■□□□□ 0.15
COL6A5A8TX70 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16■□□□□ 0.15
COL6A5A8TX70 PCED1CP-201ENST00000419887 785 ntBASIC16■□□□□ 0.15
COL6A5A8TX70 AC091390.4-202ENST00000476426 537 ntBASIC16■□□□□ 0.15
COL6A5A8TX70 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16■□□□□ 0.15
COL6A5A8TX70 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL6A5A8TX70 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC16■□□□□ 0.15
COL6A5A8TX70 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL6A5A8TX70 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC16■□□□□ 0.15
COL6A5A8TX70 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16■□□□□ 0.15
COL6A5A8TX70 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
COL6A5A8TX70 TSPY5P-201ENST00000426936 936 ntBASIC16■□□□□ 0.15
COL6A5A8TX70 AC117947.1-201ENST00000427448 529 ntBASIC16■□□□□ 0.15
COL6A5A8TX70 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL6A5A8TX70 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL6A5A8TX70 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16■□□□□ 0.15
COL6A5A8TX70 AC137767.1-201ENST00000602918 1920 ntBASIC16■□□□□ 0.15
COL6A5A8TX70 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC16■□□□□ 0.15
COL6A5A8TX70 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
COL6A5A8TX70 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL6A5A8TX70 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms