Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Col11a1Q61245 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28.67■■■□□ 2.18
Col11a1Q61245 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Col11a1Q61245 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC28.65■■■□□ 2.18
Col11a1Q61245 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
Col11a1Q61245 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Col11a1Q61245 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
Col11a1Q61245 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
Col11a1Q61245 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC28.62■■■□□ 2.17
Col11a1Q61245 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Col11a1Q61245 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC28.61■■■□□ 2.17
Col11a1Q61245 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Col11a1Q61245 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Col11a1Q61245 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC28.56■■■□□ 2.16
Col11a1Q61245 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC28.56■■■□□ 2.16
Col11a1Q61245 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Col11a1Q61245 Gm2415-204ENSMUST00000190235 2004 ntBASIC28.55■■■□□ 2.16
Col11a1Q61245 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC28.54■■■□□ 2.16
Col11a1Q61245 Gm6345-201ENSMUST00000180378 1691 ntBASIC28.54■■■□□ 2.16
Col11a1Q61245 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Col11a1Q61245 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Col11a1Q61245 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC28.5■■■□□ 2.15
Col11a1Q61245 AC131739.1-201ENSMUST00000221692 1245 ntBASIC28.5■■■□□ 2.15
Col11a1Q61245 AC167019.3-201ENSMUST00000228225 1266 ntBASIC28.5■■■□□ 2.15
Col11a1Q61245 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
Col11a1Q61245 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Col11a1Q61245 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Col11a1Q61245 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC28.46■■■□□ 2.15
Col11a1Q61245 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC28.45■■■□□ 2.14
Col11a1Q61245 Gm6311-201ENSMUST00000073790 878 ntBASIC28.44■■■□□ 2.14
Col11a1Q61245 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC28.43■■■□□ 2.14
Col11a1Q61245 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC28.41■■■□□ 2.14
Col11a1Q61245 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Col11a1Q61245 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC28.41■■■□□ 2.14
Col11a1Q61245 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
Col11a1Q61245 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
Col11a1Q61245 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Col11a1Q61245 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC28.4■■■□□ 2.14
Col11a1Q61245 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Col11a1Q61245 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Col11a1Q61245 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC28.39■■■□□ 2.13
Col11a1Q61245 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC28.38■■■□□ 2.13
Col11a1Q61245 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC28.38■■■□□ 2.13
Col11a1Q61245 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
Col11a1Q61245 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Col11a1Q61245 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Col11a1Q61245 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC28.36■■■□□ 2.13
Col11a1Q61245 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC28.36■■■□□ 2.13
Col11a1Q61245 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
Col11a1Q61245 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Col11a1Q61245 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Col11a1Q61245 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
Col11a1Q61245 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Col11a1Q61245 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Col11a1Q61245 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Col11a1Q61245 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
Col11a1Q61245 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC28.34■■■□□ 2.13
Col11a1Q61245 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Col11a1Q61245 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Col11a1Q61245 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Col11a1Q61245 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Col11a1Q61245 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Col11a1Q61245 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
Col11a1Q61245 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Col11a1Q61245 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Col11a1Q61245 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Col11a1Q61245 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Col11a1Q61245 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Col11a1Q61245 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
Col11a1Q61245 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Col11a1Q61245 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Col11a1Q61245 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Col11a1Q61245 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC28.28■■■□□ 2.12
Col11a1Q61245 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Col11a1Q61245 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC28.27■■■□□ 2.12
Col11a1Q61245 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
Col11a1Q61245 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Col11a1Q61245 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
Col11a1Q61245 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC28.26■■■□□ 2.11
Col11a1Q61245 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Col11a1Q61245 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
Col11a1Q61245 Gm6658-202ENSMUST00000209493 1885 ntBASIC28.23■■■□□ 2.11
Col11a1Q61245 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
Col11a1Q61245 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
Col11a1Q61245 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Col11a1Q61245 Particl-201ENSMUST00000205370 1560 ntBASIC28.21■■■□□ 2.11
Col11a1Q61245 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
Col11a1Q61245 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Col11a1Q61245 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Col11a1Q61245 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Col11a1Q61245 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Col11a1Q61245 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Col11a1Q61245 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Col11a1Q61245 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Col11a1Q61245 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Col11a1Q61245 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Col11a1Q61245 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
Col11a1Q61245 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
Col11a1Q61245 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
Col11a1Q61245 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms