Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC28,68■■■□□ 2,18
Col11a1Q61245 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC28,67■■■□□ 2,18
Col11a1Q61245 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC28,66■■■□□ 2,18
Col11a1Q61245 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC28,65■■■□□ 2,18
Col11a1Q61245 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC28,65■■■□□ 2,18
Col11a1Q61245 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC28,63■■■□□ 2,17
Col11a1Q61245 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC28,63■■■□□ 2,17
Col11a1Q61245 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28,63■■■□□ 2,17
Col11a1Q61245 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC28,62■■■□□ 2,17
Col11a1Q61245 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC28,62■■■□□ 2,17
Col11a1Q61245 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC28,61■■■□□ 2,17
Col11a1Q61245 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC28,6■■■□□ 2,17
Col11a1Q61245 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC28,58■■■□□ 2,17
Col11a1Q61245 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC28,56■■■□□ 2,16
Col11a1Q61245 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC28,56■■■□□ 2,16
Col11a1Q61245 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC28,55■■■□□ 2,16
Col11a1Q61245 Gm2415-204ENSMUST00000190235 2004 ntBASIC28,55■■■□□ 2,16
Col11a1Q61245 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC28,54■■■□□ 2,16
Col11a1Q61245 Gm6345-201ENSMUST00000180378 1691 ntBASIC28,54■■■□□ 2,16
Col11a1Q61245 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC28,53■■■□□ 2,16
Col11a1Q61245 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC28,5■■■□□ 2,15
Col11a1Q61245 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC28,5■■■□□ 2,15
Col11a1Q61245 AC131739.1-201ENSMUST00000221692 1245 ntBASIC28,5■■■□□ 2,15
Col11a1Q61245 AC167019.3-201ENSMUST00000228225 1266 ntBASIC28,5■■■□□ 2,15
Col11a1Q61245 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC28,5■■■□□ 2,15
Col11a1Q61245 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC28,47■■■□□ 2,15
Col11a1Q61245 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC28,47■■■□□ 2,15
Col11a1Q61245 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC28,46■■■□□ 2,15
Col11a1Q61245 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC28,45■■■□□ 2,14
Col11a1Q61245 Gm6311-201ENSMUST00000073790 878 ntBASIC28,44■■■□□ 2,14
Col11a1Q61245 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC28,43■■■□□ 2,14
Col11a1Q61245 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC28,41■■■□□ 2,14
Col11a1Q61245 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC28,41■■■□□ 2,14
Col11a1Q61245 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC28,41■■■□□ 2,14
Col11a1Q61245 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC28,41■■■□□ 2,14
Col11a1Q61245 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC28,41■■■□□ 2,14
Col11a1Q61245 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC28,41■■■□□ 2,14
Col11a1Q61245 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC28,4■■■□□ 2,14
Col11a1Q61245 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC28,4■■■□□ 2,14
Col11a1Q61245 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC28,39■■■□□ 2,14
Col11a1Q61245 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC28,39■■■□□ 2,13
Col11a1Q61245 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC28,38■■■□□ 2,13
Col11a1Q61245 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC28,38■■■□□ 2,13
Col11a1Q61245 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC28,38■■■□□ 2,13
Col11a1Q61245 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC28,37■■■□□ 2,13
Col11a1Q61245 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC28,37■■■□□ 2,13
Col11a1Q61245 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC28,36■■■□□ 2,13
Col11a1Q61245 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC28,36■■■□□ 2,13
Col11a1Q61245 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC28,36■■■□□ 2,13
Col11a1Q61245 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC28,36■■■□□ 2,13
Col11a1Q61245 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC28,36■■■□□ 2,13
Col11a1Q61245 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC28,35■■■□□ 2,13
Col11a1Q61245 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC28,35■■■□□ 2,13
Col11a1Q61245 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC28,35■■■□□ 2,13
Col11a1Q61245 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC28,35■■■□□ 2,13
Col11a1Q61245 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC28,35■■■□□ 2,13
Col11a1Q61245 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC28,34■■■□□ 2,13
Col11a1Q61245 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC28,34■■■□□ 2,13
Col11a1Q61245 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC28,34■■■□□ 2,13
Col11a1Q61245 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC28,33■■■□□ 2,13
Col11a1Q61245 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC28,32■■■□□ 2,12
Col11a1Q61245 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC28,32■■■□□ 2,12
Col11a1Q61245 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC28,32■■■□□ 2,12
Col11a1Q61245 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC28,32■■■□□ 2,12
Col11a1Q61245 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC28,32■■■□□ 2,12
Col11a1Q61245 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC28,31■■■□□ 2,12
Col11a1Q61245 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC28,31■■■□□ 2,12
Col11a1Q61245 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC28,3■■■□□ 2,12
Col11a1Q61245 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC28,29■■■□□ 2,12
Col11a1Q61245 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC28,28■■■□□ 2,12
Col11a1Q61245 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC28,28■■■□□ 2,12
Col11a1Q61245 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC28,28■■■□□ 2,12
Col11a1Q61245 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC28,28■■■□□ 2,12
Col11a1Q61245 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC28,28■■■□□ 2,12
Col11a1Q61245 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC28,27■■■□□ 2,12
Col11a1Q61245 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28,27■■■□□ 2,12
Col11a1Q61245 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC28,27■■■□□ 2,12
Col11a1Q61245 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC28,26■■■□□ 2,11
Col11a1Q61245 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC28,26■■■□□ 2,11
Col11a1Q61245 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC28,25■■■□□ 2,11
Col11a1Q61245 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC28,25■■■□□ 2,11
Col11a1Q61245 Gm6658-202ENSMUST00000209493 1885 ntBASIC28,23■■■□□ 2,11
Col11a1Q61245 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC28,22■■■□□ 2,11
Col11a1Q61245 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC28,22■■■□□ 2,11
Col11a1Q61245 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC28,21■■■□□ 2,11
Col11a1Q61245 Particl-201ENSMUST00000205370 1560 ntBASIC28,21■■■□□ 2,11
Col11a1Q61245 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC28,2■■■□□ 2,11
Col11a1Q61245 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC28,2■■■□□ 2,1
Col11a1Q61245 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC28,2■■■□□ 2,1
Col11a1Q61245 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC28,2■■■□□ 2,1
Col11a1Q61245 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC28,19■■■□□ 2,1
Col11a1Q61245 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC28,19■■■□□ 2,1
Col11a1Q61245 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC28,19■■■□□ 2,1
Col11a1Q61245 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC28,19■■■□□ 2,1
Col11a1Q61245 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC28,18■■■□□ 2,1
Col11a1Q61245 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC28,18■■■□□ 2,1
Col11a1Q61245 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC28,18■■■□□ 2,1
Col11a1Q61245 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC28,18■■■□□ 2,1
Col11a1Q61245 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28,17■■■□□ 2,1
Col11a1Q61245 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC28,17■■■□□ 2,1
Retrieved 100 of 76,532 protein–RNA pairs in 15,2 ms