Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC26.71■■□□□ 1.87
Hmgb1P63158 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Hmgb1P63158 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Hmgb1P63158 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Hmgb1P63158 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Hmgb1P63158 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Hmgb1P63158 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC26.69■■□□□ 1.86
Hmgb1P63158 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Hmgb1P63158 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Hmgb1P63158 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Hmgb1P63158 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC26.67■■□□□ 1.86
Hmgb1P63158 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Hmgb1P63158 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Hmgb1P63158 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
Hmgb1P63158 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Hmgb1P63158 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Hmgb1P63158 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Hmgb1P63158 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
Hmgb1P63158 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Hmgb1P63158 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Hmgb1P63158 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC26.6■■□□□ 1.85
Hmgb1P63158 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Hmgb1P63158 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Hmgb1P63158 Pcf11-205ENSMUST00000208255 1720 ntBASIC26.59■■□□□ 1.85
Hmgb1P63158 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
Hmgb1P63158 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
Hmgb1P63158 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Hmgb1P63158 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Hmgb1P63158 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Hmgb1P63158 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Hmgb1P63158 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
Hmgb1P63158 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Hmgb1P63158 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Hmgb1P63158 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Hmgb1P63158 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Hmgb1P63158 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC26.49■■□□□ 1.83
Hmgb1P63158 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Hmgb1P63158 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Hmgb1P63158 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Hmgb1P63158 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Hmgb1P63158 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC26.47■■□□□ 1.83
Hmgb1P63158 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Hmgb1P63158 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
Hmgb1P63158 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC26.46■■□□□ 1.83
Hmgb1P63158 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
Hmgb1P63158 Zfp131-205ENSMUST00000223812 663 ntBASIC26.46■■□□□ 1.83
Hmgb1P63158 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.83
Hmgb1P63158 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
Hmgb1P63158 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Hmgb1P63158 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Hmgb1P63158 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Hmgb1P63158 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.43■■□□□ 1.82
Hmgb1P63158 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Hmgb1P63158 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Hmgb1P63158 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Hmgb1P63158 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC26.42■■□□□ 1.82
Hmgb1P63158 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Hmgb1P63158 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC26.39■■□□□ 1.82
Hmgb1P63158 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Hmgb1P63158 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Hmgb1P63158 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Hmgb1P63158 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
Hmgb1P63158 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC26.37■■□□□ 1.81
Hmgb1P63158 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Hmgb1P63158 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Hmgb1P63158 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Hmgb1P63158 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC26.35■■□□□ 1.81
Hmgb1P63158 AC157572.2-201ENSMUST00000226970 908 ntBASIC26.35■■□□□ 1.81
Hmgb1P63158 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Hmgb1P63158 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
Hmgb1P63158 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Hmgb1P63158 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Hmgb1P63158 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Hmgb1P63158 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC26.33■■□□□ 1.81
Hmgb1P63158 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Hmgb1P63158 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Hmgb1P63158 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC26.32■■□□□ 1.8
Hmgb1P63158 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Hmgb1P63158 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Hmgb1P63158 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Hmgb1P63158 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Hmgb1P63158 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC26.3■■□□□ 1.8
Hmgb1P63158 Gm9397-201ENSMUST00000200125 605 ntBASIC26.3■■□□□ 1.8
Hmgb1P63158 Tdp2-203ENSMUST00000223804 1136 ntBASIC26.3■■□□□ 1.8
Hmgb1P63158 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC26.3■■□□□ 1.8
Hmgb1P63158 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Hmgb1P63158 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
Hmgb1P63158 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
Hmgb1P63158 Gm24970-201ENSMUST00000175582 82 ntBASIC26.27■■□□□ 1.8
Hmgb1P63158 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC26.27■■□□□ 1.8
Hmgb1P63158 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
Hmgb1P63158 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Hmgb1P63158 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
Hmgb1P63158 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Hmgb1P63158 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
Hmgb1P63158 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC26.25■■□□□ 1.79
Hmgb1P63158 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
Hmgb1P63158 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
Hmgb1P63158 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Hmgb1P63158 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms