Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.28
Sox3P53784 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
Sox3P53784 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Sox3P53784 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
Sox3P53784 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Sox3P53784 Gm11599-201ENSMUST00000118720 878 ntBASIC23.06■■□□□ 1.28
Sox3P53784 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC23.06■■□□□ 1.28
Sox3P53784 Amer2-203ENSMUST00000225247 2662 ntBASIC23.05■■□□□ 1.28
Sox3P53784 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC23.05■■□□□ 1.28
Sox3P53784 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Sox3P53784 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Sox3P53784 Cap2-205ENSMUST00000225824 1634 ntBASIC23.04■■□□□ 1.28
Sox3P53784 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Sox3P53784 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Sox3P53784 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Sox3P53784 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Sox3P53784 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
Sox3P53784 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Sox3P53784 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Sox3P53784 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Sox3P53784 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC23.02■■□□□ 1.28
Sox3P53784 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Sox3P53784 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC22.99■■□□□ 1.27
Sox3P53784 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Sox3P53784 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Sox3P53784 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Sox3P53784 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
Sox3P53784 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
Sox3P53784 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Sox3P53784 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC22.96■■□□□ 1.27
Sox3P53784 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Sox3P53784 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Sox3P53784 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC22.94■■□□□ 1.26
Sox3P53784 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Sox3P53784 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Sox3P53784 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC22.94■■□□□ 1.26
Sox3P53784 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
Sox3P53784 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.93■■□□□ 1.26
Sox3P53784 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
Sox3P53784 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC22.92■■□□□ 1.26
Sox3P53784 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Sox3P53784 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC22.92■■□□□ 1.26
Sox3P53784 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Sox3P53784 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC22.92■■□□□ 1.26
Sox3P53784 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Sox3P53784 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
Sox3P53784 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC22.9■■□□□ 1.26
Sox3P53784 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Sox3P53784 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
Sox3P53784 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Sox3P53784 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Sox3P53784 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
Sox3P53784 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Sox3P53784 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
Sox3P53784 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
Sox3P53784 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
Sox3P53784 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
Sox3P53784 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Sox3P53784 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
Sox3P53784 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Sox3P53784 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
Sox3P53784 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC22.85■■□□□ 1.25
Sox3P53784 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC22.84■■□□□ 1.25
Sox3P53784 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.84■■□□□ 1.25
Sox3P53784 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
Sox3P53784 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
Sox3P53784 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
Sox3P53784 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Sox3P53784 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Sox3P53784 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Sox3P53784 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Sox3P53784 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
Sox3P53784 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Sox3P53784 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Sox3P53784 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Sox3P53784 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC22.8■■□□□ 1.24
Sox3P53784 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC22.8■■□□□ 1.24
Sox3P53784 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Sox3P53784 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC22.78■■□□□ 1.24
Sox3P53784 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Sox3P53784 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
Sox3P53784 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC22.76■■□□□ 1.23
Sox3P53784 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Sox3P53784 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
Sox3P53784 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC22.74■■□□□ 1.23
Sox3P53784 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Sox3P53784 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Sox3P53784 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
Sox3P53784 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Sox3P53784 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
Sox3P53784 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC22.72■■□□□ 1.23
Sox3P53784 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
Sox3P53784 Fezf2-202ENSMUST00000224023 1917 ntBASIC22.7■■□□□ 1.22
Sox3P53784 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Sox3P53784 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Sox3P53784 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Sox3P53784 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Sox3P53784 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Sox3P53784 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC22.68■■□□□ 1.22
Sox3P53784 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms