Protein–RNA interactions for Protein: P09022

Hoxa1, Homeobox protein Hox-A1, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa1P09022 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Hoxa1P09022 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa1P09022 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa1P09022 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa1P09022 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa1P09022 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa1P09022 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa1P09022 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Hoxa1P09022 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hoxa1P09022 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hoxa1P09022 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hoxa1P09022 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.61■□□□□ 0.73
Hoxa1P09022 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Hoxa1P09022 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Hoxa1P09022 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hoxa1P09022 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Hoxa1P09022 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Hoxa1P09022 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
Hoxa1P09022 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC19.59■□□□□ 0.73
Hoxa1P09022 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Hoxa1P09022 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Hoxa1P09022 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Hoxa1P09022 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Hoxa1P09022 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Hoxa1P09022 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hoxa1P09022 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Hoxa1P09022 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hoxa1P09022 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hoxa1P09022 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hoxa1P09022 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC19.55■□□□□ 0.72
Hoxa1P09022 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Hoxa1P09022 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hoxa1P09022 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Hoxa1P09022 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Hoxa1P09022 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Hoxa1P09022 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Hoxa1P09022 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Hoxa1P09022 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC19.53■□□□□ 0.72
Hoxa1P09022 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Hoxa1P09022 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Hoxa1P09022 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
Hoxa1P09022 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Hoxa1P09022 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Hoxa1P09022 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Hoxa1P09022 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hoxa1P09022 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Hoxa1P09022 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Hoxa1P09022 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Hoxa1P09022 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hoxa1P09022 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Hoxa1P09022 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC19.48■□□□□ 0.71
Hoxa1P09022 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Hoxa1P09022 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hoxa1P09022 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hoxa1P09022 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hoxa1P09022 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Hoxa1P09022 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hoxa1P09022 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Hoxa1P09022 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Hoxa1P09022 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Hoxa1P09022 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Hoxa1P09022 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hoxa1P09022 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Hoxa1P09022 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hoxa1P09022 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Hoxa1P09022 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Hoxa1P09022 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
Hoxa1P09022 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hoxa1P09022 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Hoxa1P09022 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Hoxa1P09022 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Hoxa1P09022 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Hoxa1P09022 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hoxa1P09022 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hoxa1P09022 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hoxa1P09022 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Hoxa1P09022 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC19.4■□□□□ 0.7
Hoxa1P09022 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hoxa1P09022 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hoxa1P09022 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Hoxa1P09022 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hoxa1P09022 Pcf11-205ENSMUST00000208255 1720 ntBASIC19.38■□□□□ 0.69
Hoxa1P09022 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hoxa1P09022 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hoxa1P09022 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hoxa1P09022 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hoxa1P09022 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC19.36■□□□□ 0.69
Hoxa1P09022 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hoxa1P09022 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hoxa1P09022 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hoxa1P09022 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
Hoxa1P09022 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC19.34■□□□□ 0.69
Hoxa1P09022 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hoxa1P09022 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hoxa1P09022 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC19.33■□□□□ 0.68
Hoxa1P09022 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hoxa1P09022 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Hoxa1P09022 Zfp131-205ENSMUST00000223812 663 ntBASIC19.31■□□□□ 0.68
Hoxa1P09022 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Hoxa1P09022 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms