Protein–RNA interactions for Protein: A0A075B641

Trav8-1, T cell receptor alpha variable 8-1 (Fragment), mousemouse

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8-1A0A075B641 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav8-1A0A075B641 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
Trav8-1A0A075B641 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav8-1A0A075B641 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav8-1A0A075B641 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trav8-1A0A075B641 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav8-1A0A075B641 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Trav8-1A0A075B641 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav8-1A0A075B641 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav8-1A0A075B641 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav8-1A0A075B641 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trav8-1A0A075B641 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trav8-1A0A075B641 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
Trav8-1A0A075B641 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav8-1A0A075B641 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trav8-1A0A075B641 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav8-1A0A075B641 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav8-1A0A075B641 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav8-1A0A075B641 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav8-1A0A075B641 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav8-1A0A075B641 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav8-1A0A075B641 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Trav8-1A0A075B641 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav8-1A0A075B641 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trav8-1A0A075B641 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav8-1A0A075B641 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav8-1A0A075B641 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav8-1A0A075B641 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav8-1A0A075B641 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.16■□□□□ 0.34
Trav8-1A0A075B641 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav8-1A0A075B641 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav8-1A0A075B641 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
Trav8-1A0A075B641 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trav8-1A0A075B641 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav8-1A0A075B641 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav8-1A0A075B641 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC17.14■□□□□ 0.33
Trav8-1A0A075B641 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav8-1A0A075B641 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trav8-1A0A075B641 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trav8-1A0A075B641 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav8-1A0A075B641 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trav8-1A0A075B641 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trav8-1A0A075B641 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Trav8-1A0A075B641 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav8-1A0A075B641 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav8-1A0A075B641 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trav8-1A0A075B641 AL845457.1-201ENSMUST00000197244 68 ntBASIC17.11■□□□□ 0.33
Trav8-1A0A075B641 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Trav8-1A0A075B641 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav8-1A0A075B641 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav8-1A0A075B641 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC17.1■□□□□ 0.33
Trav8-1A0A075B641 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav8-1A0A075B641 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav8-1A0A075B641 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav8-1A0A075B641 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav8-1A0A075B641 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
Trav8-1A0A075B641 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
Trav8-1A0A075B641 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trav8-1A0A075B641 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav8-1A0A075B641 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC17.07■□□□□ 0.32
Trav8-1A0A075B641 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav8-1A0A075B641 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav8-1A0A075B641 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav8-1A0A075B641 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trav8-1A0A075B641 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav8-1A0A075B641 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Trav8-1A0A075B641 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav8-1A0A075B641 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav8-1A0A075B641 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav8-1A0A075B641 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav8-1A0A075B641 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trav8-1A0A075B641 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav8-1A0A075B641 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trav8-1A0A075B641 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Trav8-1A0A075B641 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Trav8-1A0A075B641 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Trav8-1A0A075B641 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trav8-1A0A075B641 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
Trav8-1A0A075B641 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Trav8-1A0A075B641 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trav8-1A0A075B641 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav8-1A0A075B641 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Trav8-1A0A075B641 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
Trav8-1A0A075B641 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.01■□□□□ 0.31
Trav8-1A0A075B641 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav8-1A0A075B641 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC17.01■□□□□ 0.31
Trav8-1A0A075B641 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav8-1A0A075B641 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav8-1A0A075B641 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Trav8-1A0A075B641 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Trav8-1A0A075B641 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trav8-1A0A075B641 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Trav8-1A0A075B641 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trav8-1A0A075B641 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav8-1A0A075B641 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav8-1A0A075B641 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav8-1A0A075B641 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav8-1A0A075B641 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav8-1A0A075B641 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav8-1A0A075B641 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms