Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 RARRES2P4-201ENST00000514074 484 ntBASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 MIR2861-201ENST00000636310 90 ntBASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 AC073314.1-201ENST00000568729 2216 ntBASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
SMC4Q9NTJ3 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SMC4Q9NTJ3 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC26.27■■□□□ 1.8
SMC4Q9NTJ3 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC26.27■■□□□ 1.8
SMC4Q9NTJ3 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC26.27■■□□□ 1.8
SMC4Q9NTJ3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC26.27■■□□□ 1.8
SMC4Q9NTJ3 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC26.27■■□□□ 1.8
SMC4Q9NTJ3 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SMC4Q9NTJ3 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SMC4Q9NTJ3 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SMC4Q9NTJ3 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
SMC4Q9NTJ3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC26.26■■□□□ 1.79
SMC4Q9NTJ3 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 BET1L-204ENST00000410108 637 ntTSL 3 BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 AC026185.1-201ENST00000445748 174 ntBASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMC4Q9NTJ3 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 CYP21A1P-202ENST00000354927 1481 ntBASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 AC092667.1-201ENST00000434301 2586 ntBASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 AL050303.2-201ENST00000619798 666 ntBASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
SMC4Q9NTJ3 LINC01006-201ENST00000333319 2292 ntBASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 MIR663A-201ENST00000385250 93 ntBASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 AC069236.1-201ENST00000604339 616 ntBASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 AP005212.1-201ENST00000581547 1997 ntBASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC26.23■■□□□ 1.79
SMC4Q9NTJ3 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 CROCCP5-201ENST00000436658 830 ntBASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
SMC4Q9NTJ3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms