Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Ccdc9Q8VC31 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Ccdc9Q8VC31 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Ccdc9Q8VC31 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 AA386476-201ENSMUST00000098781 1665 ntBASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Ccdc9Q8VC31 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Etf1-202ENSMUST00000180351 108 ntBASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC21.49■■□□□ 1.03
Ccdc9Q8VC31 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc9Q8VC31 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc9Q8VC31 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc9Q8VC31 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc9Q8VC31 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc9Q8VC31 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC21.48■■□□□ 1.03
Ccdc9Q8VC31 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc9Q8VC31 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc9Q8VC31 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC21.48■■□□□ 1.03
Ccdc9Q8VC31 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc9Q8VC31 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Ccdc9Q8VC31 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Ccdc9Q8VC31 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Ccdc9Q8VC31 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms