Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
ZNF540Q8NDQ6 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 AC233992.3-201ENST00000607491 485 ntBASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 AL512408.1-201ENST00000569378 2000 ntBASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
ZNF540Q8NDQ6 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 IRS3P-201ENST00000223076 1006 ntBASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 AC099791.1-201ENST00000416440 715 ntBASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 BX842568.3-201ENST00000418104 571 ntBASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 AC026271.2-201ENST00000428091 497 ntBASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 MAG-206ENST00000597035 542 ntTSL 4 BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
ZNF540Q8NDQ6 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 AL162377.1-201ENST00000618844 1793 ntBASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 MIR3181-201ENST00000578512 73 ntBASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZNF540Q8NDQ6 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 AP004607.7-201ENST00000527152 1677 ntBASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZNF540Q8NDQ6 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.62
ZNF540Q8NDQ6 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
ZNF540Q8NDQ6 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 MIR6821-201ENST00000617625 74 ntBASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.89■□□□□ 0.61
ZNF540Q8NDQ6 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.88■□□□□ 0.61
ZNF540Q8NDQ6 AC099778.1-201ENST00000568593 1911 ntBASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms