Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX1P28360 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
MSX1P28360 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX1P28360 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX1P28360 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX1P28360 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX1P28360 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MSX1P28360 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.77■□□□□ 0.6
MSX1P28360 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC18.77■□□□□ 0.6
MSX1P28360 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
MSX1P28360 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX1P28360 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX1P28360 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
MSX1P28360 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
MSX1P28360 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.77■□□□□ 0.6
MSX1P28360 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MSX1P28360 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.77■□□□□ 0.6
MSX1P28360 AC069236.1-201ENST00000604339 616 ntBASIC18.77■□□□□ 0.6
MSX1P28360 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.77■□□□□ 0.6
MSX1P28360 AC008694.1-202ENST00000636953 945 ntBASIC18.77■□□□□ 0.6
MSX1P28360 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
MSX1P28360 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.77■□□□□ 0.6
MSX1P28360 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
MSX1P28360 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
MSX1P28360 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
MSX1P28360 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
MSX1P28360 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
MSX1P28360 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
MSX1P28360 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.77■□□□□ 0.59
MSX1P28360 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
MSX1P28360 AC005229.4-201ENST00000610085 2198 ntBASIC18.76■□□□□ 0.59
MSX1P28360 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MSX1P28360 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSX1P28360 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
MSX1P28360 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
MSX1P28360 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.76■□□□□ 0.59
MSX1P28360 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
MSX1P28360 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.76■□□□□ 0.59
MSX1P28360 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
MSX1P28360 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
MSX1P28360 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.76■□□□□ 0.59
MSX1P28360 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MSX1P28360 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
MSX1P28360 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.76■□□□□ 0.59
MSX1P28360 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
MSX1P28360 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.76■□□□□ 0.59
MSX1P28360 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.75■□□□□ 0.59
MSX1P28360 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
MSX1P28360 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX1P28360 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.75■□□□□ 0.59
MSX1P28360 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSX1P28360 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSX1P28360 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX1P28360 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX1P28360 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.75■□□□□ 0.59
MSX1P28360 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.75■□□□□ 0.59
MSX1P28360 RARRES2P4-201ENST00000514074 484 ntBASIC18.75■□□□□ 0.59
MSX1P28360 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.75■□□□□ 0.59
MSX1P28360 AC098934.4-201ENST00000564127 592 ntBASIC18.75■□□□□ 0.59
MSX1P28360 OR10C1-204ENST00000622521 1039 ntBASIC18.75■□□□□ 0.59
MSX1P28360 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
MSX1P28360 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX1P28360 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
MSX1P28360 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
MSX1P28360 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
MSX1P28360 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 CLDN5-201ENST00000403084 2357 ntBASIC18.74■□□□□ 0.59
MSX1P28360 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.74■□□□□ 0.59
MSX1P28360 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.74■□□□□ 0.59
MSX1P28360 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.74■□□□□ 0.59
MSX1P28360 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.74■□□□□ 0.59
MSX1P28360 AC100791.3-201ENST00000617619 330 ntBASIC18.74■□□□□ 0.59
MSX1P28360 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.74■□□□□ 0.59
MSX1P28360 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSX1P28360 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
MSX1P28360 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.74■□□□□ 0.59
MSX1P28360 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.73■□□□□ 0.59
MSX1P28360 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX1P28360 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX1P28360 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX1P28360 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.73■□□□□ 0.59
MSX1P28360 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
MSX1P28360 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX1P28360 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.73■□□□□ 0.59
MSX1P28360 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSX1P28360 CYP2T1P-201ENST00000432607 1285 ntBASIC18.73■□□□□ 0.59
MSX1P28360 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSX1P28360 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms