Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx1P18111 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC14.42□□□□□ -0.1
Cdx1P18111 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx1P18111 Gm10849-201ENSMUST00000100397 618 ntBASIC14.42□□□□□ -0.1
Cdx1P18111 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC14.42□□□□□ -0.1
Cdx1P18111 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx1P18111 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx1P18111 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx1P18111 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx1P18111 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx1P18111 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Cdx1P18111 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Cdx1P18111 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Cdx1P18111 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Cdx1P18111 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
Cdx1P18111 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC14.41□□□□□ -0.1
Cdx1P18111 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC14.41□□□□□ -0.1
Cdx1P18111 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Cdx1P18111 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC14.41□□□□□ -0.1
Cdx1P18111 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Cdx1P18111 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Hivep3-201ENSMUST00000084306 2973 ntBASIC14.41□□□□□ -0.1
Cdx1P18111 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Cdx1P18111 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Cdx1P18111 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC14.41□□□□□ -0.1
Cdx1P18111 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC14.4□□□□□ -0.1
Cdx1P18111 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC14.4□□□□□ -0.1
Cdx1P18111 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC14.4□□□□□ -0.1
Cdx1P18111 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Cdx1P18111 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Cdx1P18111 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Cdx1P18111 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Cdx1P18111 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Cdx1P18111 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Cdx1P18111 Gm26571-201ENSMUST00000181399 666 ntBASIC14.39□□□□□ -0.11
Cdx1P18111 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC14.39□□□□□ -0.11
Cdx1P18111 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Cdx1P18111 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Cdx1P18111 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cdx1P18111 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Gm45774-201ENSMUST00000211992 2665 ntBASIC14.38□□□□□ -0.11
Cdx1P18111 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Cdx1P18111 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Gm20100-201ENSMUST00000209418 2272 ntBASIC14.38□□□□□ -0.11
Cdx1P18111 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Cdx1P18111 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Cdx1P18111 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Cdx1P18111 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 60.5 ms