Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SPTA1P02549 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SPTA1P02549 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.68■□□□□ 0.58
SPTA1P02549 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SPTA1P02549 AC005829.2-201ENST00000571422 1056 ntBASIC18.68■□□□□ 0.58
SPTA1P02549 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.68■□□□□ 0.58
SPTA1P02549 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.68■□□□□ 0.58
SPTA1P02549 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
SPTA1P02549 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
SPTA1P02549 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.68■□□□□ 0.58
SPTA1P02549 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SPTA1P02549 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SPTA1P02549 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SPTA1P02549 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SPTA1P02549 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SPTA1P02549 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SPTA1P02549 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.67■□□□□ 0.58
SPTA1P02549 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.67■□□□□ 0.58
SPTA1P02549 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.67■□□□□ 0.58
SPTA1P02549 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.67■□□□□ 0.58
SPTA1P02549 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SPTA1P02549 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.67■□□□□ 0.58
SPTA1P02549 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SPTA1P02549 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SPTA1P02549 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.67■□□□□ 0.58
SPTA1P02549 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SPTA1P02549 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
SPTA1P02549 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SPTA1P02549 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.66■□□□□ 0.58
SPTA1P02549 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.66■□□□□ 0.58
SPTA1P02549 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.66■□□□□ 0.58
SPTA1P02549 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SPTA1P02549 AC139530.1-201ENST00000575312 1977 ntBASIC18.66■□□□□ 0.58
SPTA1P02549 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SPTA1P02549 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SPTA1P02549 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.66■□□□□ 0.58
SPTA1P02549 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SPTA1P02549 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.66■□□□□ 0.58
SPTA1P02549 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.66■□□□□ 0.58
SPTA1P02549 AF186192.3-201ENST00000583427 947 ntBASIC18.66■□□□□ 0.58
SPTA1P02549 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.66■□□□□ 0.58
SPTA1P02549 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SPTA1P02549 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SPTA1P02549 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SPTA1P02549 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SPTA1P02549 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 AL353807.1-201ENST00000427475 662 ntBASIC18.65■□□□□ 0.58
SPTA1P02549 AL355355.2-201ENST00000442321 338 ntBASIC18.65■□□□□ 0.58
SPTA1P02549 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SPTA1P02549 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.65■□□□□ 0.58
SPTA1P02549 AC093323.1-202ENST00000635031 2045 ntBASIC18.65■□□□□ 0.58
SPTA1P02549 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
SPTA1P02549 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.65■□□□□ 0.58
SPTA1P02549 NUDT16P1-203ENST00000513809 620 ntBASIC18.65■□□□□ 0.58
SPTA1P02549 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.65■□□□□ 0.58
SPTA1P02549 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SPTA1P02549 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SPTA1P02549 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SPTA1P02549 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SPTA1P02549 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SPTA1P02549 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SPTA1P02549 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SPTA1P02549 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
SPTA1P02549 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.64■□□□□ 0.58
SPTA1P02549 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SPTA1P02549 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.64■□□□□ 0.58
SPTA1P02549 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.64■□□□□ 0.58
SPTA1P02549 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
SPTA1P02549 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.64■□□□□ 0.57
SPTA1P02549 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SPTA1P02549 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SPTA1P02549 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.64■□□□□ 0.57
SPTA1P02549 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SPTA1P02549 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC18.63■□□□□ 0.57
SPTA1P02549 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SPTA1P02549 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.63■□□□□ 0.57
SPTA1P02549 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SPTA1P02549 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SPTA1P02549 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SPTA1P02549 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.63■□□□□ 0.57
SPTA1P02549 AC005363.2-201ENST00000618631 242 ntBASIC18.63■□□□□ 0.57
SPTA1P02549 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SPTA1P02549 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC18.63■□□□□ 0.57
SPTA1P02549 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.63■□□□□ 0.57
SPTA1P02549 GPALPP1-207ENST00000611650 899 ntBASIC18.63■□□□□ 0.57
SPTA1P02549 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.63■□□□□ 0.57
SPTA1P02549 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SPTA1P02549 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SPTA1P02549 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SPTA1P02549 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms