Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 CT943659.1-201ENSMUST00000215459 326 ntBASIC20.59■□□□□ 0.89
Upf1Q9EPU0 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Gm10566-201ENSMUST00000086739 996 ntBASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Upf1Q9EPU0 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Upf1Q9EPU0 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Upf1Q9EPU0 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Upf1Q9EPU0 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC20.58■□□□□ 0.89
Upf1Q9EPU0 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC20.58■□□□□ 0.89
Upf1Q9EPU0 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Upf1Q9EPU0 Rps4l-201ENSMUST00000071745 943 ntBASIC20.58■□□□□ 0.89
Upf1Q9EPU0 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Upf1Q9EPU0 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Upf1Q9EPU0 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Upf1Q9EPU0 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Upf1Q9EPU0 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf1Q9EPU0 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Upf1Q9EPU0 Gm11779-201ENSMUST00000118541 368 ntBASIC20.57■□□□□ 0.88
Upf1Q9EPU0 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Upf1Q9EPU0 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf1Q9EPU0 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Upf1Q9EPU0 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf1Q9EPU0 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf1Q9EPU0 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf1Q9EPU0 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf1Q9EPU0 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf1Q9EPU0 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf1Q9EPU0 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Upf1Q9EPU0 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf1Q9EPU0 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf1Q9EPU0 Gm5364-201ENSMUST00000216789 889 ntBASIC20.56■□□□□ 0.88
Upf1Q9EPU0 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC20.56■□□□□ 0.88
Upf1Q9EPU0 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.56■□□□□ 0.88
Upf1Q9EPU0 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.55■□□□□ 0.88
Upf1Q9EPU0 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf1Q9EPU0 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC20.55■□□□□ 0.88
Upf1Q9EPU0 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
Upf1Q9EPU0 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf1Q9EPU0 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf1Q9EPU0 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.55■□□□□ 0.88
Upf1Q9EPU0 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf1Q9EPU0 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.55■□□□□ 0.88
Upf1Q9EPU0 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.55■□□□□ 0.88
Upf1Q9EPU0 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Upf1Q9EPU0 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Gm14057-201ENSMUST00000120631 482 ntBASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Gm24841-201ENSMUST00000158676 357 ntBASIC20.53■□□□□ 0.88
Upf1Q9EPU0 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf1Q9EPU0 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf1Q9EPU0 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf1Q9EPU0 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf1Q9EPU0 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf1Q9EPU0 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Upf1Q9EPU0 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf1Q9EPU0 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Upf1Q9EPU0 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Upf1Q9EPU0 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Upf1Q9EPU0 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf1Q9EPU0 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf1Q9EPU0 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Upf1Q9EPU0 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Upf1Q9EPU0 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Mir5131-201ENSMUST00000175426 93 ntBASIC20.51■□□□□ 0.87
Upf1Q9EPU0 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Upf1Q9EPU0 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms