Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VIMP08670 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
VIMP08670 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.68■□□□□ 0.9
VIMP08670 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
VIMP08670 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VIMP08670 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VIMP08670 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.68■□□□□ 0.9
VIMP08670 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.68■□□□□ 0.9
VIMP08670 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VIMP08670 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VIMP08670 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VIMP08670 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VIMP08670 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VIMP08670 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VIMP08670 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VIMP08670 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VIMP08670 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
VIMP08670 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
VIMP08670 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VIMP08670 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
VIMP08670 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VIMP08670 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.67■□□□□ 0.9
VIMP08670 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
VIMP08670 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VIMP08670 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VIMP08670 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.66■□□□□ 0.9
VIMP08670 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VIMP08670 AC010141.3-201ENST00000456659 717 ntBASIC20.66■□□□□ 0.9
VIMP08670 AC103834.1-201ENST00000520383 144 ntBASIC20.66■□□□□ 0.9
VIMP08670 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.66■□□□□ 0.9
VIMP08670 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
VIMP08670 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.66■□□□□ 0.9
VIMP08670 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.66■□□□□ 0.9
VIMP08670 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VIMP08670 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.66■□□□□ 0.9
VIMP08670 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.66■□□□□ 0.9
VIMP08670 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.66■□□□□ 0.9
VIMP08670 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
VIMP08670 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VIMP08670 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VIMP08670 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
VIMP08670 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.65■□□□□ 0.9
VIMP08670 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VIMP08670 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VIMP08670 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VIMP08670 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.65■□□□□ 0.9
VIMP08670 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.65■□□□□ 0.9
VIMP08670 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VIMP08670 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
VIMP08670 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.65■□□□□ 0.9
VIMP08670 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
VIMP08670 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.65■□□□□ 0.9
VIMP08670 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.65■□□□□ 0.9
VIMP08670 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.65■□□□□ 0.9
VIMP08670 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VIMP08670 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
VIMP08670 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VIMP08670 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.65■□□□□ 0.9
VIMP08670 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VIMP08670 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VIMP08670 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VIMP08670 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VIMP08670 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
VIMP08670 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.64■□□□□ 0.9
VIMP08670 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
VIMP08670 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.64■□□□□ 0.89
VIMP08670 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VIMP08670 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VIMP08670 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.64■□□□□ 0.89
VIMP08670 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
VIMP08670 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
VIMP08670 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.64■□□□□ 0.89
VIMP08670 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VIMP08670 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
VIMP08670 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
VIMP08670 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
VIMP08670 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VIMP08670 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VIMP08670 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
VIMP08670 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VIMP08670 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
VIMP08670 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
VIMP08670 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
VIMP08670 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VIMP08670 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VIMP08670 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VIMP08670 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.63■□□□□ 0.89
VIMP08670 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VIMP08670 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VIMP08670 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
VIMP08670 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VIMP08670 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VIMP08670 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
VIMP08670 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.63■□□□□ 0.89
VIMP08670 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VIMP08670 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VIMP08670 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
VIMP08670 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
VIMP08670 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VIMP08670 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms