Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 FAM201B-201ENST00000458407 597 ntBASIC22.66■■□□□ 1.22
TRAIPQ9BWF2 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC22.66■■□□□ 1.22
TRAIPQ9BWF2 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TRAIPQ9BWF2 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
TRAIPQ9BWF2 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.66■■□□□ 1.22
TRAIPQ9BWF2 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
TRAIPQ9BWF2 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 POU5F1P3-201ENST00000428824 1078 ntBASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 FBXW4P1-201ENST00000426721 2239 ntBASIC22.65■■□□□ 1.22
TRAIPQ9BWF2 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
TRAIPQ9BWF2 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC22.64■■□□□ 1.22
TRAIPQ9BWF2 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
TRAIPQ9BWF2 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC22.64■■□□□ 1.22
TRAIPQ9BWF2 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 DUSP5P2-201ENST00000426873 1033 ntBASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 BET1L-207ENST00000529614 560 ntTSL 5 BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRAIPQ9BWF2 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 RNA5SP413-201ENST00000516373 109 ntBASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
TRAIPQ9BWF2 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TRAIPQ9BWF2 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 CYP2T3P-201ENST00000601990 817 ntBASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 AL137060.1-201ENST00000618151 2648 ntBASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 ITM2C-210ENST00000620962 501 ntBASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
TRAIPQ9BWF2 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
TRAIPQ9BWF2 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms