Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC22.16■■□□□ 1.14
ZNF560Q96MR9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC22.16■■□□□ 1.14
ZNF560Q96MR9 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
ZNF560Q96MR9 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC22.16■■□□□ 1.14
ZNF560Q96MR9 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC22.16■■□□□ 1.14
ZNF560Q96MR9 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 AL138781.1-201ENST00000566567 1274 ntBASIC22.15■■□□□ 1.14
ZNF560Q96MR9 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 AL024507.2-201ENST00000606070 2574 ntBASIC22.15■■□□□ 1.14
ZNF560Q96MR9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
ZNF560Q96MR9 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC22.14■■□□□ 1.14
ZNF560Q96MR9 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
ZNF560Q96MR9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.14■■□□□ 1.14
ZNF560Q96MR9 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC22.14■■□□□ 1.14
ZNF560Q96MR9 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 MIR4758-201ENST00000577688 71 ntBASIC22.14■■□□□ 1.13
ZNF560Q96MR9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
ZNF560Q96MR9 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC22.13■■□□□ 1.13
ZNF560Q96MR9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 MCRIP2P1-201ENST00000394346 511 ntBASIC22.13■■□□□ 1.13
ZNF560Q96MR9 BX276092.2-201ENST00000417668 665 ntBASIC22.13■■□□□ 1.13
ZNF560Q96MR9 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.13■■□□□ 1.13
ZNF560Q96MR9 AL049796.1-201ENST00000565336 1766 ntBASIC22.12■■□□□ 1.13
ZNF560Q96MR9 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ZNF560Q96MR9 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC22.12■■□□□ 1.13
ZNF560Q96MR9 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC22.12■■□□□ 1.13
ZNF560Q96MR9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
ZNF560Q96MR9 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ZNF560Q96MR9 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
ZNF560Q96MR9 AC092118.2-201ENST00000613495 667 ntBASIC22.12■■□□□ 1.13
ZNF560Q96MR9 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC22.12■■□□□ 1.13
ZNF560Q96MR9 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.12■■□□□ 1.13
ZNF560Q96MR9 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
ZNF560Q96MR9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC22.12■■□□□ 1.13
ZNF560Q96MR9 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
ZNF560Q96MR9 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 AC073210.2-201ENST00000430369 194 ntBASIC22.11■■□□□ 1.13
ZNF560Q96MR9 AC069152.1-201ENST00000438030 544 ntBASIC22.11■■□□□ 1.13
ZNF560Q96MR9 CYP2T3P-201ENST00000601990 817 ntBASIC22.11■■□□□ 1.13
ZNF560Q96MR9 AC133041.1-202ENST00000642053 222 ntBASIC22.11■■□□□ 1.13
ZNF560Q96MR9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.11■■□□□ 1.13
ZNF560Q96MR9 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms