Protein–RNA interactions for Protein: Q5R1I8

Trav3-1, T cell receptor alpha variable 3-1 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-1Q5R1I8 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Trav3-1Q5R1I8 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Trav3-1Q5R1I8 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Trav3-1Q5R1I8 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Gm43213-201ENSMUST00000151866 1790 ntBASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav3-1Q5R1I8 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC12.28□□□□□ -0.44
Trav3-1Q5R1I8 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms