Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.25■□□□□ 0.35
Sox3P53784 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Gm15378-201ENSMUST00000121894 207 ntBASIC17.25■□□□□ 0.35
Sox3P53784 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC17.25■□□□□ 0.35
Sox3P53784 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
Sox3P53784 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC17.25■□□□□ 0.35
Sox3P53784 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.25■□□□□ 0.35
Sox3P53784 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Sox3P53784 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Sox3P53784 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.24■□□□□ 0.35
Sox3P53784 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.24■□□□□ 0.35
Sox3P53784 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.24■□□□□ 0.35
Sox3P53784 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Sox3P53784 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Sox3P53784 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.23■□□□□ 0.35
Sox3P53784 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox3P53784 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox3P53784 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox3P53784 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox3P53784 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Sox3P53784 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox3P53784 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Sox3P53784 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC17.23■□□□□ 0.35
Sox3P53784 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox3P53784 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox3P53784 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox3P53784 AA386476-201ENSMUST00000098781 1665 ntBASIC17.23■□□□□ 0.35
Sox3P53784 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Sox3P53784 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.22■□□□□ 0.35
Sox3P53784 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC17.22■□□□□ 0.35
Sox3P53784 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Sox3P53784 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.22■□□□□ 0.35
Sox3P53784 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.22■□□□□ 0.35
Sox3P53784 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.22■□□□□ 0.35
Sox3P53784 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Sox3P53784 Gm43799-201ENSMUST00000201845 579 ntBASIC17.22■□□□□ 0.35
Sox3P53784 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC17.22■□□□□ 0.35
Sox3P53784 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC17.22■□□□□ 0.35
Sox3P53784 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Sox3P53784 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Sox3P53784 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Sox3P53784 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Sox3P53784 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.22■□□□□ 0.35
Sox3P53784 Gm21596-201ENSMUST00000178049 1316 ntBASIC17.21■□□□□ 0.35
Sox3P53784 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Sox3P53784 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Sox3P53784 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.21■□□□□ 0.35
Sox3P53784 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Sox3P53784 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 76.9 ms