Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Hmgb1P63158 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Hmgb1P63158 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Hmgb1P63158 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Hmgb1P63158 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb1P63158 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb1P63158 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb1P63158 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb1P63158 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb1P63158 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Hmgb1P63158 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb1P63158 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
Hmgb1P63158 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb1P63158 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Hmgb1P63158 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Hmgb1P63158 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC19.92■□□□□ 0.78
Hmgb1P63158 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb1P63158 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Hmgb1P63158 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb1P63158 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb1P63158 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.91■□□□□ 0.78
Hmgb1P63158 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb1P63158 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Hmgb1P63158 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb1P63158 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.91■□□□□ 0.78
Hmgb1P63158 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb1P63158 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb1P63158 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Hmgb1P63158 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.9■□□□□ 0.78
Hmgb1P63158 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Hmgb1P63158 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Hmgb1P63158 Nespas-201ENSMUST00000143738 1083 ntBASIC19.9■□□□□ 0.78
Hmgb1P63158 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC19.9■□□□□ 0.78
Hmgb1P63158 Gm7514-201ENSMUST00000209475 934 ntBASIC19.9■□□□□ 0.78
Hmgb1P63158 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Hmgb1P63158 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Hmgb1P63158 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
Hmgb1P63158 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.89■□□□□ 0.77
Hmgb1P63158 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
Hmgb1P63158 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
Hmgb1P63158 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Hmgb1P63158 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Hmgb1P63158 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Hmgb1P63158 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Hmgb1P63158 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Hmgb1P63158 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Hmgb1P63158 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb1P63158 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Hmgb1P63158 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb1P63158 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb1P63158 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Hmgb1P63158 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Hmgb1P63158 Gm10033-202ENSMUST00000211874 928 ntBASIC19.88■□□□□ 0.77
Hmgb1P63158 Gm18671-201ENSMUST00000214826 683 ntBASIC19.88■□□□□ 0.77
Hmgb1P63158 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb1P63158 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb1P63158 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.88■□□□□ 0.77
Hmgb1P63158 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb1P63158 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb1P63158 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Hmgb1P63158 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb1P63158 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb1P63158 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Hmgb1P63158 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb1P63158 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb1P63158 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Hmgb1P63158 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb1P63158 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.87■□□□□ 0.77
Hmgb1P63158 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb1P63158 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.87■□□□□ 0.77
Hmgb1P63158 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb1P63158 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb1P63158 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb1P63158 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Hmgb1P63158 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC19.87■□□□□ 0.77
Hmgb1P63158 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb1P63158 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb1P63158 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb1P63158 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb1P63158 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb1P63158 Gm42642-201ENSMUST00000200683 355 ntBASIC19.86■□□□□ 0.77
Hmgb1P63158 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb1P63158 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb1P63158 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Hmgb1P63158 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.86■□□□□ 0.77
Hmgb1P63158 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms