Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Sdc1P18828 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Sdc1P18828 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Sdc1P18828 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Sdc1P18828 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Sdc1P18828 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC14.91□□□□□ -0.02
Sdc1P18828 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC14.91□□□□□ -0.02
Sdc1P18828 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Sdc1P18828 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC14.9□□□□□ -0.02
Sdc1P18828 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Sdc1P18828 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC14.9□□□□□ -0.02
Sdc1P18828 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC14.9□□□□□ -0.02
Sdc1P18828 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC14.9□□□□□ -0.02
Sdc1P18828 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Sdc1P18828 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Sdc1P18828 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Sdc1P18828 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Sdc1P18828 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Sdc1P18828 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Sdc1P18828 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
Sdc1P18828 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
Sdc1P18828 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Sdc1P18828 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Sdc1P18828 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Sdc1P18828 Gm45774-201ENSMUST00000211992 2665 ntBASIC14.89□□□□□ -0.03
Sdc1P18828 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC14.89□□□□□ -0.03
Sdc1P18828 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Sdc1P18828 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Sdc1P18828 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Sdc1P18828 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Sdc1P18828 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Sdc1P18828 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Sdc1P18828 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Sdc1P18828 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Sdc1P18828 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Sdc1P18828 Haglr-201ENSMUST00000100000 2085 ntBASIC14.88□□□□□ -0.03
Sdc1P18828 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Sdc1P18828 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Sdc1P18828 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Sdc1P18828 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Sdc1P18828 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Sdc1P18828 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Sdc1P18828 Gm42918-201ENSMUST00000199249 1580 ntBASIC14.88□□□□□ -0.03
Sdc1P18828 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Sdc1P18828 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Sdc1P18828 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
Sdc1P18828 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Sdc1P18828 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC14.87□□□□□ -0.03
Sdc1P18828 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Sdc1P18828 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sdc1P18828 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms