Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
TRAV40A0A0B4J280 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV40A0A0B4J280 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV40A0A0B4J280 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC16.91■□□□□ 0.3
TRAV40A0A0B4J280 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC16.91■□□□□ 0.3
TRAV40A0A0B4J280 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC16.91■□□□□ 0.3
TRAV40A0A0B4J280 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV40A0A0B4J280 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC16.91■□□□□ 0.3
TRAV40A0A0B4J280 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 LSM12P1-201ENST00000411836 588 ntBASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 PTPA-214ENST00000423100 988 ntTSL 2 BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 DUSP5P2-201ENST00000426873 1033 ntBASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 FAM201B-201ENST00000458407 597 ntBASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TRAV40A0A0B4J280 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TRAV40A0A0B4J280 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TRAV40A0A0B4J280 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
TRAV40A0A0B4J280 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 AC007322.3-201ENST00000426526 701 ntBASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 RHEB-204ENST00000472642 900 ntTSL 3 BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 AC097658.1-201ENST00000475555 843 ntBASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 AC091874.3-201ENST00000512672 1195 ntBASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 BET1L-207ENST00000529614 560 ntTSL 5 BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 AC083880.1-201ENST00000608266 535 ntBASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 TMEM191A-211ENST00000637163 1067 ntBASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 ECEL1P1-201ENST00000373592 1742 ntBASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC16.89■□□□□ 0.29
TRAV40A0A0B4J280 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 AL355472.2-201ENST00000422958 438 ntBASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC16.88■□□□□ 0.29
TRAV40A0A0B4J280 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 OR2A1-AS1-201ENST00000462305 773 ntBASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 MYC-209ENST00000641252 345 ntBASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
TRAV40A0A0B4J280 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAV40A0A0B4J280 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms