Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeast

Predictions only

Length 423 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	P34223	YNL235C	YNL235C	432 nt		3.03	□□□□□ -1.92
SHP1	P34223	ATX1	YNL259C	222 nt		3.03	□□□□□ -1.92
SHP1	P34223	YOR277C	YOR277C	309 nt		3.03	□□□□□ -1.92
SHP1	P34223	YPR170C	YPR170C	336 nt		3.03	□□□□□ -1.92
SHP1	P34223	YDR061W	YDR061W	1620 nt		3.03	□□□□□ -1.92
SHP1	P34223	UBP8	YMR223W	1416 nt		3.02	□□□□□ -1.93
SHP1	P34223	MFB1	YDR219C	1398 nt		3.02	□□□□□ -1.93
SHP1	P34223	TIF4631	YGR162W	2859 nt		3.02	□□□□□ -1.93
SHP1	P34223	YCR045W-A	YCR045W-A	351 nt		3.02	□□□□□ -1.93
SHP1	P34223	PEA2	YER149C	1263 nt		3.02	□□□□□ -1.93
SHP1	P34223	PCL5	YHR071W	690 nt		3.02	□□□□□ -1.93
SHP1	P34223	RPL17B	YJL177W	555 nt		3.02	□□□□□ -1.93
SHP1	P34223	YOR385W	YOR385W	873 nt		3.02	□□□□□ -1.93
SHP1	P34223	YPL068C	YPL068C	882 nt		3.02	□□□□□ -1.93
SHP1	P34223	RPL33A	YPL143W	324 nt		3.02	□□□□□ -1.93
SHP1	P34223	DRS2	YAL026C	4068 nt		3.02	□□□□□ -1.93
SHP1	P34223	YGR109W-A	YGR109W-A	873 nt		3.01	□□□□□ -1.93
SHP1	P34223	RPS23A	YGR118W	438 nt		3.01	□□□□□ -1.93
SHP1	P34223	YIL082W	YIL082W	873 nt		3.01	□□□□□ -1.93
SHP1	P34223	ASG7	YJL170C	630 nt		3.01	□□□□□ -1.93
SHP1	P34223	YLR257W	YLR257W	966 nt		3.01	□□□□□ -1.93
SHP1	P34223	ARC18	YLR370C	537 nt		3.01	□□□□□ -1.93
SHP1	P34223	AFT2	YPL202C	1251 nt		3.01	□□□□□ -1.93
SHP1	P34223	RPS23B	YPR132W	438 nt		3.01	□□□□□ -1.93
SHP1	P34223	YPL150W	YPL150W	2706 nt		3.01	□□□□□ -1.93
SHP1	P34223	YHR078W	YHR078W	1659 nt		3.01	□□□□□ -1.93
SHP1	P34223	DNA2	YHR164C	4569 nt		3	□□□□□ -1.93
SHP1	P34223	ASI3	YNL008C	2031 nt		3	□□□□□ -1.93
SHP1	P34223	YDR210W-A	YDR210W-A	1317 nt		3	□□□□□ -1.93
SHP1	P34223	YDR029W	YDR029W	315 nt		3	□□□□□ -1.93
SHP1	P34223	EMI1	YDR512C	564 nt		3	□□□□□ -1.93
SHP1	P34223	YGR053C	YGR053C	852 nt		3	□□□□□ -1.93
SHP1	P34223	VMA21	YGR105W	234 nt		3	□□□□□ -1.93
SHP1	P34223	GMC2	YLR445W	567 nt		3	□□□□□ -1.93
SHP1	P34223	RPL23A	YBL087C	414 nt		3	□□□□□ -1.93
SHP1	P34223	CSI2	YOL007C	1026 nt		3	□□□□□ -1.93
SHP1	P34223	PFY1	YOR122C	381 nt		3	□□□□□ -1.93
SHP1	P34223	YOR283W	YOR283W	693 nt		3	□□□□□ -1.93
SHP1	P34223	MBA1	YBR185C	837 nt		3	□□□□□ -1.93
SHP1	P34223	SPO71	YDR104C	3738 nt		3	□□□□□ -1.93
SHP1	P34223	FLO1	YAR050W	4614 nt		3	□□□□□ -1.93
SHP1	P34223	YKL075C	YKL075C	1353 nt		3	□□□□□ -1.93
SHP1	P34223	SET1	YHR119W	3243 nt		2.99	□□□□□ -1.93
SHP1	P34223	YSP2	YDR326C	4317 nt		2.99	□□□□□ -1.93
SHP1	P34223	VEL1	YGL258W	621 nt		2.99	□□□□□ -1.93
SHP1	P34223	RPL11B	YGR085C	525 nt		2.99	□□□□□ -1.93
SHP1	P34223	YLR202C	YLR202C	327 nt		2.99	□□□□□ -1.93
SHP1	P34223	UNG1	YML021C	1080 nt		2.99	□□□□□ -1.93
SHP1	P34223	YPL107W	YPL107W	747 nt		2.99	□□□□□ -1.93
SHP1	P34223	CSM4	YPL200W	471 nt		2.99	□□□□□ -1.93
SHP1	P34223	RPL11A	YPR102C	525 nt		2.99	□□□□□ -1.93
SHP1	P34223	SEC66	YBR171W	621 nt		2.99	□□□□□ -1.93
SHP1	P34223	YBR300C	YBR300C	498 nt		2.99	□□□□□ -1.93
SHP1	P34223	RIM13	YMR154C	2184 nt		2.99	□□□□□ -1.93
SHP1	P34223	STT4	YLR305C	5703 nt		2.99	□□□□□ -1.93
SHP1	P34223	CSR2	YPR030W	3366 nt		2.99	□□□□□ -1.93
SHP1	P34223	SLP1	YOR154W	1764 nt		2.99	□□□□□ -1.93
SHP1	P34223	YDR186C	YDR186C	2634 nt		2.99	□□□□□ -1.93
SHP1	P34223	YPL216W	YPL216W	3309 nt		2.99	□□□□□ -1.93
SHP1	P34223	YJL132W	YJL132W	2253 nt		2.98	□□□□□ -1.93
SHP1	P34223	STI1	YOR027W	1770 nt		2.98	□□□□□ -1.93
SHP1	P34223	VHR1	YIL056W	1923 nt		2.98	□□□□□ -1.93
SHP1	P34223	CRD1	YDL142C	852 nt		2.98	□□□□□ -1.93
SHP1	P34223	snR9	snR9	187 nt		2.98	□□□□□ -1.93
SHP1	P34223	YDR018C	YDR018C	1191 nt		2.98	□□□□□ -1.93
SHP1	P34223	RSM24	YDR175C	960 nt		2.98	□□□□□ -1.93
SHP1	P34223	RRT13	YER066W	558 nt		2.98	□□□□□ -1.93
SHP1	P34223	YKL023C-A	YKL023C-A	228 nt		2.98	□□□□□ -1.93
SHP1	P34223	SRP21	YKL122C	504 nt		2.98	□□□□□ -1.93
SHP1	P34223	VPS63	YLR261C	327 nt		2.98	□□□□□ -1.93
SHP1	P34223	ARF3	YOR094W	552 nt		2.98	□□□□□ -1.93
SHP1	P34223	CTF13	YMR094W	1437 nt		2.98	□□□□□ -1.93
SHP1	P34223	RPN3	YER021W	1572 nt		2.98	□□□□□ -1.93
SHP1	P34223	YCG1	YDR325W	3108 nt		2.98	□□□□□ -1.93
SHP1	P34223	GYL1	YMR192W	2163 nt		2.98	□□□□□ -1.93
SHP1	P34223	DAD1	YDR016C	285 nt		2.97	□□□□□ -1.93
SHP1	P34223	MIC19	YFR011C	513 nt		2.97	□□□□□ -1.93
SHP1	P34223	YGR293C	YGR293C	462 nt		2.97	□□□□□ -1.93
SHP1	P34223	YHR032W-A	YHR032W-A	180 nt		2.97	□□□□□ -1.93
SHP1	P34223	YJL119C	YJL119C	324 nt		2.97	□□□□□ -1.93
SHP1	P34223	YJL169W	YJL169W	369 nt		2.97	□□□□□ -1.93
SHP1	P34223	YMR187C	YMR187C	1296 nt		2.97	□□□□□ -1.93
SHP1	P34223	MPP6	YNR024W	561 nt		2.97	□□□□□ -1.93
SHP1	P34223	AIM4	YBR194W	372 nt		2.97	□□□□□ -1.93
SHP1	P34223	MAK21	YDR060W	3078 nt		2.97	□□□□□ -1.93
SHP1	P34223	NEW1	YPL226W	3591 nt		2.97	□□□□□ -1.93
SHP1	P34223	POL2	YNL262W	6669 nt		2.97	□□□□□ -1.93
SHP1	P34223	CBP2	YHL038C	1893 nt		2.96	□□□□□ -1.93
SHP1	P34223	RAD5	YLR032W	3510 nt		2.96	□□□□□ -1.94
SHP1	P34223	MAK5	YBR142W	2322 nt		2.96	□□□□□ -1.94
SHP1	P34223	SNA4	YDL123W	423 nt		2.96	□□□□□ -1.94
SHP1	P34223	PEX10	YDR265W	1014 nt		2.96	□□□□□ -1.94
SHP1	P34223	FAR7	YFR008W	666 nt		2.96	□□□□□ -1.94
SHP1	P34223	YIR020C-B	YIR020C-B	735 nt		2.96	□□□□□ -1.94
SHP1	P34223	RLP24	YLR009W	600 nt		2.96	□□□□□ -1.94
SHP1	P34223	YNL109W	YNL109W	546 nt		2.96	□□□□□ -1.94
SHP1	P34223	YPL142C	YPL142C	318 nt		2.96	□□□□□ -1.94
SHP1	P34223	MRPL40	YPL173W	894 nt		2.96	□□□□□ -1.94
SHP1	P34223	YBR071W	YBR071W	636 nt		2.96	□□□□□ -1.94
SHP1	P34223	NTC20	YBR188C	423 nt		2.96	□□□□□ -1.94

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