Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NUP54Q7Z3B4 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 AC026310.3-201ENST00000625186 2373 ntBASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NUP54Q7Z3B4 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 AC007375.3-201ENST00000600936 2314 ntBASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 BID-214ENST00000617586 542 ntTSL 5 BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
NUP54Q7Z3B4 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
NUP54Q7Z3B4 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.27■□□□□ 0.67
NUP54Q7Z3B4 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
NUP54Q7Z3B4 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 Z98882.1-201ENST00000622160 2253 ntBASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NUP54Q7Z3B4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 AC004911.1-201ENST00000416316 871 ntBASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
NUP54Q7Z3B4 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUP54Q7Z3B4 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
NUP54Q7Z3B4 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NUP54Q7Z3B4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
NUP54Q7Z3B4 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
NUP54Q7Z3B4 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.24■□□□□ 0.67
NUP54Q7Z3B4 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
NUP54Q7Z3B4 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.24■□□□□ 0.67
NUP54Q7Z3B4 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.24■□□□□ 0.67
NUP54Q7Z3B4 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.24■□□□□ 0.67
NUP54Q7Z3B4 AC011767.1-201ENST00000617410 1153 ntBASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms