Protein–RNA interactions for Protein: Q61572

Foxc1, Forkhead box protein C1, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxc1Q61572 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC13.34□□□□□ -0.27
Foxc1Q61572 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Zcwpw2-202ENSMUST00000187329 1469 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Grk6-206ENSMUST00000224995 2971 ntBASIC13.34□□□□□ -0.27
Foxc1Q61572 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Foxc1Q61572 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC13.34□□□□□ -0.27
Foxc1Q61572 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Foxc1Q61572 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Foxc1Q61572 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Foxc1Q61572 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
Foxc1Q61572 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
Foxc1Q61572 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Foxc1Q61572 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC13.33□□□□□ -0.28
Foxc1Q61572 Gm5408-201ENSMUST00000197998 747 ntBASIC13.33□□□□□ -0.28
Foxc1Q61572 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
Foxc1Q61572 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Foxc1Q61572 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Gm7290-201ENSMUST00000104990 617 ntBASIC13.32□□□□□ -0.28
Foxc1Q61572 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Gm12918-201ENSMUST00000120234 636 ntBASIC13.32□□□□□ -0.28
Foxc1Q61572 Gm12441-201ENSMUST00000121806 588 ntBASIC13.32□□□□□ -0.28
Foxc1Q61572 Gm15710-201ENSMUST00000121821 636 ntBASIC13.32□□□□□ -0.28
Foxc1Q61572 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC13.32□□□□□ -0.28
Foxc1Q61572 Nespas-201ENSMUST00000143738 1083 ntBASIC13.32□□□□□ -0.28
Foxc1Q61572 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC13.32□□□□□ -0.28
Foxc1Q61572 Gm5075-201ENSMUST00000196916 622 ntBASIC13.32□□□□□ -0.28
Foxc1Q61572 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC13.32□□□□□ -0.28
Foxc1Q61572 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC13.32□□□□□ -0.28
Foxc1Q61572 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Foxc1Q61572 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Foxc1Q61572 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Foxc1Q61572 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Foxc1Q61572 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC13.31□□□□□ -0.28
Foxc1Q61572 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
Foxc1Q61572 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC13.31□□□□□ -0.28
Foxc1Q61572 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC13.31□□□□□ -0.28
Foxc1Q61572 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Foxc1Q61572 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms