Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC25.75■■□□□ 1.71
CCDC88AQ3V6T2 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
CCDC88AQ3V6T2 AC061975.6-201ENST00000579045 1553 ntBASIC25.75■■□□□ 1.71
CCDC88AQ3V6T2 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC88AQ3V6T2 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC88AQ3V6T2 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CCDC88AQ3V6T2 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
CCDC88AQ3V6T2 TSPY7P-201ENST00000431358 1114 ntBASIC25.74■■□□□ 1.71
CCDC88AQ3V6T2 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC88AQ3V6T2 ABHD17AP6-201ENST00000458502 1044 ntBASIC25.74■■□□□ 1.71
CCDC88AQ3V6T2 RNF146-206ENST00000480444 843 ntTSL 2 BASIC25.74■■□□□ 1.71
CCDC88AQ3V6T2 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC88AQ3V6T2 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CCDC88AQ3V6T2 RN7SL850P-201ENST00000579959 291 ntBASIC25.74■■□□□ 1.71
CCDC88AQ3V6T2 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC25.74■■□□□ 1.71
CCDC88AQ3V6T2 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC25.74■■□□□ 1.71
CCDC88AQ3V6T2 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
CCDC88AQ3V6T2 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC25.72■■□□□ 1.71
CCDC88AQ3V6T2 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC88AQ3V6T2 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC25.71■■□□□ 1.71
CCDC88AQ3V6T2 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC88AQ3V6T2 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC88AQ3V6T2 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC25.71■■□□□ 1.71
CCDC88AQ3V6T2 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC25.71■■□□□ 1.71
CCDC88AQ3V6T2 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
CCDC88AQ3V6T2 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC88AQ3V6T2 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC25.71■■□□□ 1.71
CCDC88AQ3V6T2 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
CCDC88AQ3V6T2 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.71■■□□□ 1.71
CCDC88AQ3V6T2 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC25.7■■□□□ 1.71
CCDC88AQ3V6T2 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC25.7■■□□□ 1.71
CCDC88AQ3V6T2 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
CCDC88AQ3V6T2 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC25.7■■□□□ 1.71
CCDC88AQ3V6T2 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC25.7■■□□□ 1.71
CCDC88AQ3V6T2 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
CCDC88AQ3V6T2 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC88AQ3V6T2 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC25.7■■□□□ 1.7
CCDC88AQ3V6T2 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC88AQ3V6T2 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC88AQ3V6T2 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC25.7■■□□□ 1.7
CCDC88AQ3V6T2 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC25.7■■□□□ 1.7
CCDC88AQ3V6T2 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC25.7■■□□□ 1.7
CCDC88AQ3V6T2 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC25.7■■□□□ 1.7
CCDC88AQ3V6T2 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
CCDC88AQ3V6T2 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 LTK-203ENST00000453182 2412 ntTSL 2 BASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 AC091799.1-201ENST00000422823 811 ntBASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CCDC88AQ3V6T2 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 AC087499.1-201ENST00000418141 1075 ntBASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 HLA-B-256ENST00000639848 1089 ntBASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 RPS2P55-201ENST00000397318 883 ntBASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 AC107956.1-201ENST00000494359 873 ntBASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 SOX15-203ENST00000570788 1093 ntBASIC25.68■■□□□ 1.7
CCDC88AQ3V6T2 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC25.68■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms