Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.94■□□□□ 0.94
SHOX2O60902 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.94■□□□□ 0.94
SHOX2O60902 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SHOX2O60902 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SHOX2O60902 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.93■□□□□ 0.94
SHOX2O60902 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SHOX2O60902 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.93■□□□□ 0.94
SHOX2O60902 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SHOX2O60902 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHOX2O60902 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
SHOX2O60902 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHOX2O60902 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.93■□□□□ 0.94
SHOX2O60902 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHOX2O60902 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SHOX2O60902 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHOX2O60902 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SHOX2O60902 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHOX2O60902 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SHOX2O60902 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHOX2O60902 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.92■□□□□ 0.94
SHOX2O60902 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SHOX2O60902 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHOX2O60902 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHOX2O60902 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHOX2O60902 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHOX2O60902 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.92■□□□□ 0.94
SHOX2O60902 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.92■□□□□ 0.94
SHOX2O60902 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
SHOX2O60902 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.92■□□□□ 0.94
SHOX2O60902 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHOX2O60902 AC005332.7-201ENST00000614046 2005 ntBASIC20.92■□□□□ 0.94
SHOX2O60902 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SHOX2O60902 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SHOX2O60902 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
SHOX2O60902 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
SHOX2O60902 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.91■□□□□ 0.94
SHOX2O60902 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 AP004607.7-201ENST00000527152 1677 ntBASIC20.91■□□□□ 0.94
SHOX2O60902 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SHOX2O60902 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHOX2O60902 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.9■□□□□ 0.94
SHOX2O60902 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHOX2O60902 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHOX2O60902 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.9■□□□□ 0.94
SHOX2O60902 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SHOX2O60902 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.9■□□□□ 0.94
SHOX2O60902 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHOX2O60902 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.9■□□□□ 0.94
SHOX2O60902 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
SHOX2O60902 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHOX2O60902 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHOX2O60902 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.9■□□□□ 0.94
SHOX2O60902 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
SHOX2O60902 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.9■□□□□ 0.94
SHOX2O60902 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHOX2O60902 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SHOX2O60902 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHOX2O60902 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.9■□□□□ 0.94
SHOX2O60902 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.9■□□□□ 0.94
SHOX2O60902 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
SHOX2O60902 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SHOX2O60902 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SHOX2O60902 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHOX2O60902 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHOX2O60902 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SHOX2O60902 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHOX2O60902 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.94
SHOX2O60902 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHOX2O60902 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SHOX2O60902 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHOX2O60902 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHOX2O60902 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SHOX2O60902 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHOX2O60902 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHOX2O60902 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHOX2O60902 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
SHOX2O60902 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHOX2O60902 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHOX2O60902 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHOX2O60902 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SHOX2O60902 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SHOX2O60902 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms