Protein–RNA interactions for Protein: Q9JKE1

Trem3, TREM-3, mousemouse

Predictions only

Length 183 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem3Q9JKE1 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trem3Q9JKE1 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trem3Q9JKE1 Shroom3-211ENSMUST00000225438 5742 ntBASIC14.83□□□□□ -0.04
Trem3Q9JKE1 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trem3Q9JKE1 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Trem3Q9JKE1 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Gm21956-201ENSMUST00000179946 522 ntBASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC14.82□□□□□ -0.04
Trem3Q9JKE1 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Trem3Q9JKE1 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Gm37811-201ENSMUST00000192416 2601 ntBASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trem3Q9JKE1 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trem3Q9JKE1 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trem3Q9JKE1 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trem3Q9JKE1 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Trem3Q9JKE1 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC14.79□□□□□ -0.04
Trem3Q9JKE1 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trem3Q9JKE1 Gm43034-201ENSMUST00000198678 1364 ntBASIC14.79□□□□□ -0.04
Trem3Q9JKE1 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trem3Q9JKE1 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trem3Q9JKE1 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trem3Q9JKE1 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Gm5828-201ENSMUST00000071842 1860 ntBASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trem3Q9JKE1 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trem3Q9JKE1 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trem3Q9JKE1 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms